Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   H1X08_RS01790 Genome accession   NZ_LR822025
Coordinates   340039..340824 (+) Length   261 a.a.
NCBI ID   WP_180482414.1    Uniprot ID   -
Organism   Streptococcus thermophilus isolate STH_CIRM_961     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 335039..345824
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1X08_RS01770 (STHERMO_0383) pflA 335316..336116 (+) 801 WP_180482413.1 pyruvate formate-lyase-activating protein -
  H1X08_RS01775 (STHERMO_0385) - 336185..336938 (+) 754 Protein_315 hypothetical protein -
  H1X08_RS10560 - 337010..337579 (-) 570 Protein_316 IS30 family transposase -
  H1X08_RS01780 (STHERMO_0388) - 337759..338211 (-) 453 WP_002946987.1 universal stress protein -
  H1X08_RS01785 (STHERMO_0389) - 338566..339780 (+) 1215 WP_179972216.1 pyridoxal phosphate-dependent aminotransferase -
  H1X08_RS01790 (STHERMO_0390) codY 340039..340824 (+) 786 WP_180482414.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  H1X08_RS01795 (STHERMO_0391) - 340887..341444 (+) 558 WP_179972214.1 cysteine hydrolase family protein -
  H1X08_RS01800 (STHERMO_0392) - 341568..342416 (+) 849 WP_179973029.1 MetQ/NlpA family ABC transporter substrate-binding protein -
  H1X08_RS01805 (STHERMO_0393) msrA 342428..342937 (+) 510 WP_002951714.1 peptide-methionine (S)-S-oxide reductase MsrA -
  H1X08_RS01810 - 343125..344138 (+) 1014 Protein_323 family 1 glycosylhydrolase -
  H1X08_RS10565 (STHERMO_0398) - 344466..344933 (+) 468 WP_232086952.1 glycosyltransferase -
  H1X08_RS01825 (STHERMO_0399) gatC 345074..345376 (+) 303 WP_002884769.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -

Sequence

Protein


Download         Length: 261 a.a.        Molecular weight: 28944.00 Da        Isoelectric Point: 4.4150

>NTDB_id=1010155 H1X08_RS01790 WP_180482414.1 340039..340824(+) (codY) [Streptococcus thermophilus isolate STH_CIRM_961]
MANLLDKTRKITSILQRSVDNLEGDLPYNNMAAQLADIIDCNAAIVNGGGTLLGYAMKYKTNNDRVEEFFKAKQLPEEYI
RGISRVYDTQENIGIDSDLTIFPVESKDDFPDGLTTIAPIYGGGMRLGSFIIWRNDHDFVDDDLILVEIAATVVGLQLLN
LQTENLEETIRKQTAINMAINTLSYSEIKAVSAILNELDGLEGRLTASVIADRIGITRSVIVNALRKLESSGIIESRSLG
MKGTYLKVLNEGIYDKLKEYE

Nucleotide


Download         Length: 786 bp        

>NTDB_id=1010155 H1X08_RS01790 WP_180482414.1 340039..340824(+) (codY) [Streptococcus thermophilus isolate STH_CIRM_961]
ATGGCAAATTTGCTTGATAAAACACGCAAAATTACTTCTATCTTGCAACGCTCAGTAGATAATTTGGAAGGAGATCTTCC
ATATAACAACATGGCTGCTCAGTTGGCAGATATTATTGATTGTAATGCTGCTATCGTAAATGGTGGAGGTACTCTCCTTG
GTTATGCTATGAAATACAAAACCAACAATGACCGTGTGGAAGAGTTTTTTAAAGCGAAACAACTTCCAGAGGAATACATA
CGTGGTATCAGCCGTGTTTATGATACTCAAGAAAATATCGGTATTGACAGTGACTTGACCATCTTCCCAGTGGAATCAAA
AGATGATTTCCCTGACGGTTTGACTACAATTGCACCAATCTATGGTGGTGGTATGCGTCTTGGTTCTTTCATTATTTGGC
GTAACGACCATGATTTTGTGGACGACGACCTTATCTTGGTTGAGATTGCAGCTACAGTAGTTGGTTTGCAATTGTTGAAT
CTTCAAACAGAAAACTTGGAAGAAACGATTCGTAAACAAACAGCTATTAATATGGCTATTAATACCTTGTCTTACTCAGA
AATCAAGGCAGTTTCAGCTATCTTGAATGAGTTGGACGGTTTAGAAGGTCGTTTGACAGCCTCTGTTATCGCGGACCGTA
TCGGAATCACTCGTTCTGTTATTGTTAATGCTCTTCGTAAATTAGAATCATCTGGTATTATTGAAAGTCGTTCTCTTGGT
ATGAAAGGTACTTACCTTAAAGTCCTTAACGAAGGTATCTACGATAAATTGAAAGAATACGAATAA

Domains

Predicted by InterProScan.

CodY helix-turn-helix domain (HTH_CodY)

(201-261)

CodY GAF-like domain (CodY)

(3-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

65.37

98.467

0.644
  codY Bacillus subtilis subsp. subtilis str. 168

53.036

94.636

0.502