Detailed information NTG1010142

Bioinformatically predicted

Overview

• Name: recD/recD2/recDB
• Type: Machinery gene
• Locus tag: H1X08_RS01140
• Genome accession: NZ_LR822025
• Coordinates: 202605..205109 (-)
• Length: 834 a.a.
• NCBI ID: WP_180482383.1
• Uniprot ID: -
• Organism: Streptococcus thermophilus isolate STH_CIRM_961
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 197605..210109

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H1X08_RS01110 (STHERMO_0215)	-	198885..199115 (-)	231	WP_002947111.1	DNA-dependent RNA polymerase subunit epsilon	-
H1X08_RS01115 (STHERMO_0216)	tsaB	199378..200064 (+)	687	WP_002947108.1	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	-
H1X08_RS01120 (STHERMO_0217)	rimI	200066..200479 (+)	414	WP_014621963.1	ribosomal protein S18-alanine N-acetyltransferase	-
H1X08_RS01125 (STHERMO_0218)	tsaD	200479..201492 (+)	1014	WP_179972287.1	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	-
H1X08_RS01130 (STHERMO_0219)	-	201538..202236 (+)	699	WP_415669290.1	AzlC family ABC transporter permease	-
H1X08_RS01135 (STHERMO_0220)	-	202223..202549 (+)	327	WP_179973035.1	AzlD domain-containing protein	-
H1X08_RS01140 (STHERMO_0221)	recD/recD2/recDB	202605..205109 (-)	2505	WP_180482383.1	ATP-dependent RecD-like DNA helicase	Machinery gene
H1X08_RS01145 (STHERMO_0222)	lepB	205171..205794 (-)	624	WP_179972285.1	signal peptidase I	-
H1X08_RS01150 (STHERMO_0223)	rnhC	205813..206703 (-)	891	WP_179972284.1	ribonuclease HIII	-
H1X08_RS01155 (STHERMO_0224)	-	207017..207334 (+)	318	WP_003096030.1	hypothetical protein	-
H1X08_RS01160 (STHERMO_0225)	-	207331..207873 (+)	543	WP_100273142.1	CvpA family protein	-

Sequence

Protein

• Length: 834 a.a.
• Molecular weight: 94228.68 Da
• Isoelectric Point: 4.6095

>NTDB_id=1010142 H1X08_RS01140 WP_180482383.1 202605..205109(-) (recD/recD2/recDB) [Streptococcus thermophilus isolate STH_CIRM_961]
MQEFYFSGTIERIIFENTSNFFRILLLEIDETDSDFEDYEIIVTGTMGDVMEGGDYTFWGQLTNHPKYGKQLQMTRYERS
KPSASGLIKYFSSDNFKGIGKKTAERIVEIYGEDPIDKILEDPSKLEQIPNLSKVNREAFLAKLKMNYGTEQILSKLSSY
GLTPKAASQIFNQYKEESLNLIEKYPYLLVEEVQGIGFKMADQLAERLGIASDAPERLRAALINCLLETSMEEGDTYIEA
KSLLERTIILLESSRQIELDPALVAHQLTHLIQEDKVQNIETRIFDNTLYFAEQGIYTHLTRIIKDQPDISAEDKIQASL
ERVEEELDITYDKVQKDAIIKALQSKVFILTGGPGTGKTTVINGIIKTYADLHGLDLKKSDLPIILAAPTGRAARRMNEL
TKLPSATIHRHLGLNGEDDFKTLDDYLDCDLIIIDEFSMVDTWLANQLFESISDTTQVIIVGDQDQLPSVGPGQVLADLL
QIDDLPKVSLTKIFRQSEDSTIVTLASQMRQGQLPTDFTEKKADRSYFEANANHIPQMIPKIVSAAIKSGIAAQDVQILA
PMYRGQAGINNLNTIMQDLLNPKEKANQFAFNDIFFRKNDKILHLVNDTELNVFNGDIGIITDLIPGKYTESKQDEIYMS
FDGNEVIYPRNEWNKITLAYAMSIHKSQGSEFPVVILPITRQSGRMLQRNLIYTAITRAKSKLVMLGEIAAFDYAVHNEG
AKRNTYLIQRFEQTYTQVVDKSVEKNVKNEGTDASNQTERKNSSPSETIENKGFSENINPSQTLINTYSHPVDKSVNKPV
QTEENYRLTEENWATIDPMIGLSEDDIAAFFNNN

Nucleotide

• Length: 2505 bp

>NTDB_id=1010142 H1X08_RS01140 WP_180482383.1 202605..205109(-) (recD/recD2/recDB) [Streptococcus thermophilus isolate STH_CIRM_961]
ATGCAAGAATTTTATTTTTCAGGAACTATCGAGCGCATCATTTTTGAAAATACCAGTAATTTTTTTCGTATCCTACTCTT
AGAAATTGATGAAACTGACAGTGATTTTGAAGACTATGAAATCATTGTTACTGGAACTATGGGGGATGTCATGGAGGGGG
GAGACTACACCTTCTGGGGTCAGCTAACCAATCACCCCAAATATGGCAAACAACTCCAAATGACTCGCTACGAGCGTTCA
AAACCCTCAGCCAGTGGCCTTATCAAATATTTCTCCAGTGATAATTTCAAAGGAATCGGTAAGAAAACGGCCGAGCGTAT
TGTCGAGATTTATGGCGAAGACCCTATTGACAAGATTCTCGAAGACCCTAGTAAATTAGAGCAGATTCCTAATCTGTCCA
AGGTAAACCGAGAGGCCTTCCTTGCAAAATTAAAAATGAACTATGGTACTGAACAAATCTTGTCCAAACTTTCCAGCTAT
GGCCTCACACCAAAGGCTGCCTCACAAATTTTCAACCAATATAAGGAAGAATCACTTAACCTTATTGAAAAATATCCTTA
TCTCTTGGTAGAGGAAGTCCAGGGAATTGGATTTAAAATGGCCGATCAACTAGCCGAACGCCTAGGGATTGCTAGCGATG
CTCCTGAGCGTTTACGAGCCGCCCTAATTAACTGTCTGCTAGAAACTAGTATGGAAGAAGGGGACACCTACATCGAAGCC
AAGTCCTTGCTTGAACGGACTATCATTCTTTTGGAAAGTTCTCGCCAGATTGAACTTGACCCTGCCTTGGTTGCTCACCA
ATTAACCCACCTCATCCAAGAGGATAAGGTGCAAAATATAGAGACTAGAATTTTTGATAATACCCTATATTTTGCAGAAC
AGGGCATCTATACCCACCTAACTCGTATCATAAAAGACCAGCCTGACATCAGTGCTGAGGACAAAATCCAAGCAAGTCTT
GAAAGGGTGGAAGAGGAGCTTGATATCACCTATGATAAGGTTCAAAAAGATGCCATTATTAAAGCCCTACAAAGCAAGGT
CTTCATCCTGACAGGTGGTCCCGGAACAGGGAAAACCACTGTTATTAACGGAATTATTAAAACCTATGCTGACCTTCATG
GTTTAGACCTCAAAAAGTCTGATTTACCCATTATTTTAGCAGCACCAACGGGACGGGCTGCTCGTCGGATGAACGAACTG
ACCAAGCTCCCTAGTGCCACTATCCATAGACATTTGGGGCTTAATGGCGAGGACGATTTCAAGACCTTAGATGACTATCT
CGATTGCGATTTGATTATCATCGATGAGTTCTCTATGGTTGATACTTGGTTGGCCAATCAACTCTTCGAAAGCATTTCCG
ATACCACTCAAGTAATCATTGTAGGTGACCAAGATCAGCTACCTTCTGTAGGCCCTGGCCAAGTCTTAGCTGACCTTTTG
CAGATTGATGACTTGCCTAAGGTTTCCCTAACCAAAATTTTCAGACAATCTGAGGATTCCACTATTGTTACCTTAGCTAG
CCAGATGCGCCAAGGCCAACTACCCACTGATTTCACAGAGAAAAAAGCTGACCGATCATACTTTGAGGCTAATGCTAACC
ATATTCCACAGATGATCCCTAAAATTGTCTCTGCCGCTATTAAAAGTGGGATCGCTGCTCAGGATGTACAGATTCTGGCC
CCCATGTACCGGGGACAGGCTGGTATCAACAATCTCAATACCATTATGCAGGATCTACTTAATCCCAAAGAAAAAGCCAA
TCAATTTGCCTTTAATGATATTTTCTTCCGTAAGAATGACAAGATTCTCCACCTGGTCAACGATACAGAACTCAATGTCT
TCAATGGCGATATTGGAATCATTACTGATCTCATACCTGGTAAATATACTGAAAGTAAGCAAGACGAAATTTACATGTCC
TTCGATGGCAATGAGGTTATCTATCCTCGTAACGAATGGAATAAGATTACTCTGGCCTATGCCATGTCTATACACAAATC
CCAAGGGAGTGAATTCCCAGTCGTTATCCTTCCCATCACACGCCAAAGTGGGCGTATGCTGCAACGTAACCTCATCTACA
CCGCTATCACACGCGCCAAAAGTAAACTGGTCATGTTGGGGGAAATCGCAGCCTTCGATTATGCCGTTCACAACGAGGGG
GCCAAACGTAATACCTACCTCATCCAACGTTTTGAACAAACTTATACACAAGTTGTTGATAAGTCTGTCGAAAAGAATGT
TAAAAACGAGGGAACAGACGCATCCAATCAAACAGAAAGGAAAAATAGTAGCCCCTCAGAAACCATTGAAAACAAAGGCT
TCTCAGAAAATATCAATCCATCCCAAACTCTTATTAACACTTATTCACATCCTGTGGATAAGTCTGTTAACAAACCTGTG
CAAACAGAAGAAAACTATCGTTTAACTGAAGAAAATTGGGCAACTATCGATCCAATGATAGGTCTCAGCGAAGACGATAT
TGCAGCCTTTTTTAACAATAACTAA

Domains

Predicted by InterProScan.

• AAA domain (AAA_30) (331-524)

• UvrD-like helicase C-terminal domain (UvrD_C_2) (659-705)

• Helix-hairpin-helix containing domain (HHH_RecD2) (147-237)

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (572-638)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD/recD2/recDB	Bacillus subtilis subsp. subtilis str. 168	45.114	89.568	0.404