Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   ABNG17_RS08015 Genome accession   NZ_CP158181
Coordinates   1489859..1490638 (+) Length   259 a.a.
NCBI ID   WP_003210838.1    Uniprot ID   -
Organism   Bacillus pumilus strain RI06-95     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1484859..1495638
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABNG17_RS07995 (ABNG17_07995) trmFO 1485563..1486867 (+) 1305 WP_003212444.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  ABNG17_RS08000 (ABNG17_08000) xerC 1486930..1487847 (+) 918 WP_003211704.1 tyrosine recombinase XerC -
  ABNG17_RS08005 (ABNG17_08005) hslV 1487862..1488407 (+) 546 WP_003211247.1 ATP-dependent protease subunit HslV -
  ABNG17_RS08010 (ABNG17_08010) hslU 1488424..1489824 (+) 1401 WP_003211907.1 HslU--HslV peptidase ATPase subunit -
  ABNG17_RS08015 (ABNG17_08015) codY 1489859..1490638 (+) 780 WP_003210838.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  ABNG17_RS08020 (ABNG17_08020) flgB 1490925..1491314 (+) 390 WP_350303829.1 flagellar basal body rod protein FlgB -
  ABNG17_RS08025 (ABNG17_08025) flgC 1491314..1491766 (+) 453 WP_012009953.1 flagellar basal body rod protein FlgC -
  ABNG17_RS08030 (ABNG17_08030) fliE 1491778..1492095 (+) 318 WP_003212183.1 flagellar hook-basal body complex protein FliE -
  ABNG17_RS08035 (ABNG17_08035) fliF 1492145..1493737 (+) 1593 WP_034619909.1 flagellar basal-body MS-ring/collar protein FliF -
  ABNG17_RS08040 (ABNG17_08040) fliG 1493749..1494765 (+) 1017 WP_003210883.1 flagellar motor switch protein FliG -
  ABNG17_RS08045 (ABNG17_08045) fliH 1494758..1495522 (+) 765 WP_309216696.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29060.31 Da        Isoelectric Point: 4.6614

>NTDB_id=1010126 ABNG17_RS08015 WP_003210838.1 1489859..1490638(+) (codY) [Bacillus pumilus strain RI06-95]
MALLQKTRIINSMLQDAAGKPVNFKEMAETLRDVIDSNIFVLSRRGKLLGYSINQQIENPRMKKMLEDRQFPEEYTKSLF
NIPETSSNLDINSEYTAFPIENRDLFESGLTTIVPIIGGGDRLGTLILSRLQDTFKDDDLILAEYGATVVGMEILREKSE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=1010126 ABNG17_RS08015 WP_003210838.1 1489859..1490638(+) (codY) [Bacillus pumilus strain RI06-95]
ATGGCGTTACTACAAAAAACAAGGATTATTAACTCAATGCTGCAAGATGCAGCGGGGAAACCAGTTAATTTTAAGGAAAT
GGCAGAAACGTTGAGAGATGTCATTGATTCAAACATTTTCGTATTAAGCAGAAGAGGGAAGCTTCTAGGCTACTCGATCA
ACCAGCAGATTGAAAATCCGCGTATGAAGAAAATGCTTGAAGACCGTCAGTTCCCTGAAGAATATACAAAGAGTCTATTT
AACATCCCTGAAACATCTTCAAATCTTGACATTAACAGTGAGTATACAGCTTTCCCGATTGAGAACCGTGATTTATTTGA
ATCAGGTTTGACAACCATTGTTCCAATTATCGGAGGAGGAGATCGTTTAGGGACGTTAATCCTGTCTCGTTTGCAAGATA
CATTCAAAGATGATGATTTAATTCTTGCTGAATACGGTGCAACAGTTGTTGGAATGGAGATCCTTCGTGAGAAATCAGAG
GAAATCGAAGAAGAAGCAAGAAGTAAAGCTGTTGTCCAAATGGCGATTAGTTCTCTTTCATATAGTGAGCTTGAAGCCAT
TGAGCACATCTTTGAAGAACTTGATGGCAACGAAGGGCTTCTAGTGGCAAGTAAAATTGCTGACCGTGTAGGAATCACTC
GTTCAGTGATCGTGAACGCCTTACGTAAGTTAGAAAGTGCAGGCGTCATCGAATCTCGTTCTCTTGGAATGAAGGGAACG
TATATCAAAGTGTTAAACAACAAATTTTTAATTGAACTTGAAAATTTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

95.367

100

0.954
  codY Lactococcus lactis subsp. lactis strain DGCC12653

48.031

98.069

0.471

Multiple sequence alignment