Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGE   Type   Machinery gene
Locus tag   H0513_RS09565 Genome accession   NZ_LR822023
Coordinates   1833311..1833604 (-) Length   97 a.a.
NCBI ID   WP_179972344.1    Uniprot ID   -
Organism   Streptococcus thermophilus isolate STH_CIRM_368     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1828311..1838604
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0513_RS09535 (STHERMO_2163) - 1828688..1829350 (-) 663 WP_179972338.1 CPBP family intramembrane glutamic endopeptidase -
  H0513_RS11610 (STHERMO_2165) - 1829447..1829888 (-) 442 Protein_1812 CAAX protease -
  H0513_RS09540 (STHERMO_2166) - 1829900..1830097 (-) 198 WP_179972339.1 helix-turn-helix transcriptional regulator -
  H0513_RS09545 (STHERMO_2167) - 1830345..1831538 (-) 1194 WP_179972340.1 acetate kinase -
  H0513_RS09550 (STHERMO_2168) comGH 1831594..1832550 (-) 957 WP_179972341.1 class I SAM-dependent methyltransferase Machinery gene
  H0513_RS09555 (STHERMO_2169) comGG 1832601..1832912 (-) 312 WP_179972342.1 competence type IV pilus minor pilin ComGG Machinery gene
  H0513_RS09560 (STHERMO_2170) comGF 1832890..1833327 (-) 438 WP_179972343.1 competence type IV pilus minor pilin ComGF Machinery gene
  H0513_RS09565 (STHERMO_2171) comGE 1833311..1833604 (-) 294 WP_179972344.1 competence type IV pilus minor pilin ComGE Machinery gene
  H0513_RS09570 (STHERMO_2172) comGD 1833576..1834004 (-) 429 WP_269473123.1 competence type IV pilus minor pilin ComGD Machinery gene
  H0513_RS09575 (STHERMO_2173) comGC 1833964..1834290 (-) 327 WP_179972346.1 competence type IV pilus major pilin ComGC Machinery gene
  H0513_RS09580 (STHERMO_2174) comGB 1834287..1835387 (-) 1101 WP_179973038.1 competence type IV pilus assembly protein ComGB Machinery gene
  H0513_RS09585 (STHERMO_2175) comGA/cglA/cilD 1835269..1836210 (-) 942 WP_179972347.1 competence type IV pilus ATPase ComGA Machinery gene
  H0513_RS09590 (STHERMO_2176) - 1836291..1836653 (-) 363 WP_179972348.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10830.71 Da        Isoelectric Point: 10.4561

>NTDB_id=1010120 H0513_RS09565 WP_179972344.1 1833311..1833604(-) (comGE) [Streptococcus thermophilus isolate STH_CIRM_368]
MVNIKRRSLRGYILIESLVAMAVLVLVSSLILEQINTNRRLMADNLHQQDVLSVATMAVQTKQDQLTLNGIAVTVKRSQQ
GITVYESGKEIIHVSKQ

Nucleotide


Download         Length: 294 bp        

>NTDB_id=1010120 H0513_RS09565 WP_179972344.1 1833311..1833604(-) (comGE) [Streptococcus thermophilus isolate STH_CIRM_368]
GTGGTAAATATAAAAAGACGATCTCTTAGAGGATATATTCTTATTGAAAGCCTGGTAGCTATGGCTGTTTTAGTACTTGT
CAGCAGTCTGATATTGGAACAAATTAATACCAACCGCAGACTAATGGCTGATAATCTCCATCAACAAGATGTCTTGAGTG
TGGCAACAATGGCAGTTCAGACCAAGCAAGACCAGTTAACGCTAAATGGCATAGCGGTGACAGTTAAACGTAGCCAGCAA
GGTATCACGGTTTATGAATCGGGAAAGGAGATTATTCATGTATCTAAGCAGTAA

Domains

Predicted by InterProScan.

Type II secretory pathway pseudopilin (ComGE)

(13-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGE Streptococcus mutans UA140

42.268

100

0.423
  comGE Streptococcus mutans UA159

42.268

100

0.423