Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   ABN702_RS10220 Genome accession   NZ_CP158164
Coordinates   2009253..2010032 (-) Length   259 a.a.
NCBI ID   WP_417900563.1    Uniprot ID   -
Organism   Bacillus sp. CSS-39     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2004253..2015032
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABN702_RS10190 (ABN702_10170) fliH 2004266..2005069 (-) 804 WP_417900558.1 flagellar assembly protein FliH -
  ABN702_RS10195 (ABN702_10175) fliG 2005062..2006081 (-) 1020 WP_417900559.1 flagellar motor switch protein FliG -
  ABN702_RS10200 (ABN702_10180) fliF 2006101..2007687 (-) 1587 WP_417900560.1 flagellar basal-body MS-ring/collar protein FliF -
  ABN702_RS10205 (ABN702_10185) fliE 2007810..2008106 (-) 297 WP_417900561.1 flagellar hook-basal body complex protein FliE -
  ABN702_RS10210 (ABN702_10190) flgC 2008123..2008575 (-) 453 WP_417900562.1 flagellar basal body rod protein FlgC -
  ABN702_RS10215 (ABN702_10195) flgB 2008575..2008964 (-) 390 WP_204413677.1 flagellar basal body rod protein FlgB -
  ABN702_RS10220 (ABN702_10200) codY 2009253..2010032 (-) 780 WP_417900563.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  ABN702_RS10225 (ABN702_10205) hslU 2010058..2011458 (-) 1401 WP_417900564.1 HslU--HslV peptidase ATPase subunit -
  ABN702_RS10230 (ABN702_10210) hslV 2011476..2012018 (-) 543 WP_386637536.1 ATP-dependent protease subunit HslV -
  ABN702_RS10235 (ABN702_10215) xerC 2012041..2012946 (-) 906 WP_417900565.1 tyrosine recombinase XerC -
  ABN702_RS10240 (ABN702_10220) trmFO 2013014..2014318 (-) 1305 WP_417900566.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28973.37 Da        Isoelectric Point: 4.7359

>NTDB_id=1010030 ABN702_RS10220 WP_417900563.1 2009253..2010032(-) (codY) [Bacillus sp. CSS-39]
MALLQKTRTINAMLQKAAGKPVNFKEMSETLCNVIEANVFVLSRRGKLLGYSINQQIENERMIKMLEDRQFPEEYTKNLF
NISETSSNLDVESEYTAFPVENKDLFQSGLTTIVPIIGGGERLGTLILARLQEPFSDDDLIMAEYGATVVGMEILREKSE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGKEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLMELSKLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=1010030 ABN702_RS10220 WP_417900563.1 2009253..2010032(-) (codY) [Bacillus sp. CSS-39]
ATGGCATTATTACAAAAAACAAGAACTATCAATGCAATGCTGCAAAAAGCGGCAGGTAAACCAGTAAATTTTAAGGAAAT
GTCCGAAACGCTTTGCAATGTGATTGAAGCAAATGTGTTCGTCCTTAGCCGTCGAGGAAAGTTGCTTGGTTATTCCATTA
ACCAGCAGATTGAAAACGAGAGAATGATCAAGATGTTGGAAGATCGTCAATTCCCTGAAGAATATACAAAGAACCTATTC
AACATCTCTGAAACTTCATCCAACCTGGATGTTGAAAGCGAATATACAGCATTCCCTGTTGAAAACAAGGATCTGTTCCA
ATCAGGTCTGACTACGATCGTCCCGATTATCGGTGGTGGCGAGCGTTTAGGAACACTTATTCTTGCCCGCCTGCAGGAGC
CTTTCTCCGATGACGATCTTATCATGGCTGAGTACGGTGCAACAGTAGTAGGTATGGAAATTCTTCGAGAGAAATCGGAA
GAAATCGAAGAGGAAGCAAGAAGTAAAGCTGTGGTACAGATGGCTATCAGTTCCCTTTCATACAGTGAGCTTGAAGCAAT
CGAACACATTTTTGAGGAACTGGATGGTAAAGAAGGTTTACTTGTAGCAAGTAAAATCGCTGACCGTGTCGGTATTACGA
GATCTGTAATCGTAAATGCACTTCGTAAGCTTGAGAGTGCCGGAGTAATCGAATCTCGCTCCTTAGGAATGAAAGGAACG
TACATTAAAGTATTAAACGATAAGTTCCTTATGGAATTATCTAAATTAAAGTCTCACTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

88.803

100

0.888
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471

Multiple sequence alignment