Detailed information NTG1009929

Bioinformatically predicted

Overview

• Name: recD/recD2/recDB
• Type: Machinery gene
• Locus tag: H0514_RS01475
• Genome accession: NZ_LR822020
• Coordinates: 266551..269055 (-)
• Length: 834 a.a.
• NCBI ID: WP_179972286.1
• Uniprot ID: -
• Organism: Streptococcus thermophilus isolate STH_CIRM_956
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 261551..274055

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H0514_RS01445 (STHERMO_0304)	-	262831..263061 (-)	231	WP_002947111.1	DNA-dependent RNA polymerase subunit epsilon	-
H0514_RS01450 (STHERMO_0305)	tsaB	263324..264010 (+)	687	WP_179972288.1	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	-
H0514_RS01455 (STHERMO_0306)	rimI	264012..264425 (+)	414	WP_014621963.1	ribosomal protein S18-alanine N-acetyltransferase	-
H0514_RS01460 (STHERMO_0307)	tsaD	264425..265438 (+)	1014	WP_179972287.1	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	-
H0514_RS01465 (STHERMO_0308)	-	265484..266182 (+)	699	WP_415669290.1	AzlC family ABC transporter permease	-
H0514_RS01470 (STHERMO_0309)	-	266169..266495 (+)	327	WP_179973035.1	AzlD domain-containing protein	-
H0514_RS01475 (STHERMO_0310)	recD/recD2/recDB	266551..269055 (-)	2505	WP_179972286.1	ATP-dependent RecD-like DNA helicase	Machinery gene
H0514_RS01480 (STHERMO_0311)	lepB	269117..269740 (-)	624	WP_179972285.1	signal peptidase I	-
H0514_RS01485 (STHERMO_0312)	rnhC	269759..270649 (-)	891	WP_179972284.1	ribonuclease HIII	-
H0514_RS01490 (STHERMO_0313)	-	270963..271280 (+)	318	WP_003096030.1	hypothetical protein	-
H0514_RS01495 (STHERMO_0314)	-	271277..271819 (+)	543	WP_100273142.1	CvpA family protein	-

Sequence

Protein

• Length: 834 a.a.
• Molecular weight: 94286.72 Da
• Isoelectric Point: 4.5917

>NTDB_id=1009929 H0514_RS01475 WP_179972286.1 266551..269055(-) (recD/recD2/recDB) [Streptococcus thermophilus isolate STH_CIRM_956]
MQEFYFSGTIERIIFENTSNFFRILLLEIDETDSDFEDYEIIVTGTMGDVMEGGDYTFWGQLTNHPKYGKQLQMTRYERS
KPSASGLIKYFSSDNFKGIGKKTAERIVEIYGEDPIDKILEDPSKLEQIPNLSKVNREAFLAKLKMNYGTEQILSKLSSY
GLTPKAASQIFNQYKEESLNLIEKYPYLLVEEVQGIGFKMADQLAERLGIASDAPERLRAALINCLLETSMEEGDTYIEA
KSLLERTIILLESSRQIELDPALVAHQLTHLIQEDKVQNIETRIFDNTLYFAEQGIYTHLTRIIKDQPDISAEDKIQASL
ERVEEELDITYDKVQKDAIIKALQSKVFILTGGPGTGKTTVINGIIKTYADLHGLDLKKSDLPIILAAPTGRAARRMNEL
TKLPSATIHRHLGLNGEDDFKTLDDYLDCDLIIIDEFSMVDTWLANQLFESISDTTQVIIVGDQDQLPSVGPGQVLADLL
QIDDLPKVSLTKIFRQSEDSTIVTLASQMRQGQLPTDFTEKKADRSYFEANANHIPQMIPKIVSAAIKSGIAAQDVQILA
PMYRGQAGINNLNTIMQDLLNPKEKANQFAFNDIFFRKNDKILHLVNDTELNVFNGDIGIITDLIPGKYTESKQDEIYMS
FDGNEVIYPRNEWNKITLAYAMSIHKSQGSEFPVVILPITRQSGRMLQRNLIYTAITRAKSKLVMLGEIAAFDYAVHNEG
AKRNTYLIQRFEQTYTQVVDKSVEKNVKNEGTDASNQTERKNSSPSETIENKDFSENINPSQTLINTYSHPVDKSVNKPV
QTEENYRLTEENWATIDPMIGLSEDDIAAFFNNN

Nucleotide

• Length: 2505 bp

>NTDB_id=1009929 H0514_RS01475 WP_179972286.1 266551..269055(-) (recD/recD2/recDB) [Streptococcus thermophilus isolate STH_CIRM_956]
ATGCAAGAATTTTATTTTTCAGGAACTATCGAGCGCATCATTTTTGAAAATACCAGTAATTTTTTTCGTATCCTACTCTT
AGAAATTGATGAAACTGACAGTGATTTTGAAGACTATGAAATCATTGTTACTGGAACTATGGGGGATGTCATGGAGGGGG
GAGACTACACCTTCTGGGGTCAGCTAACCAATCACCCCAAATATGGCAAACAACTCCAAATGACTCGCTACGAGCGTTCA
AAACCCTCAGCCAGTGGCCTTATCAAATATTTCTCCAGTGATAATTTCAAAGGAATCGGTAAGAAAACGGCCGAGCGTAT
TGTCGAGATTTATGGCGAAGACCCTATTGACAAGATTCTCGAAGACCCTAGTAAATTAGAGCAGATTCCTAATCTGTCCA
AGGTAAACCGAGAGGCCTTCCTTGCAAAATTAAAAATGAACTATGGTACTGAACAAATCTTGTCCAAACTTTCCAGCTAT
GGCCTCACACCAAAGGCTGCCTCACAAATTTTCAACCAATATAAGGAAGAATCACTTAACCTTATTGAAAAATATCCTTA
TCTCTTGGTAGAGGAAGTCCAGGGAATTGGATTTAAAATGGCCGATCAACTAGCCGAACGCCTAGGGATTGCTAGCGATG
CTCCTGAGCGTTTACGAGCCGCCCTAATTAACTGTCTGCTAGAAACTAGTATGGAAGAAGGGGACACCTACATCGAAGCC
AAGTCCTTGCTTGAACGGACTATCATTCTTTTGGAAAGTTCTCGCCAGATTGAACTTGACCCTGCCTTGGTTGCTCACCA
ATTAACCCACCTCATCCAAGAGGATAAGGTGCAAAATATAGAGACTAGAATTTTTGATAATACCCTATATTTTGCAGAAC
AGGGCATCTATACCCACCTAACTCGTATCATAAAAGACCAGCCTGACATCAGTGCTGAGGACAAAATCCAAGCAAGTCTT
GAAAGGGTGGAAGAGGAGCTTGATATCACCTATGATAAGGTTCAAAAAGATGCCATTATTAAAGCCCTACAAAGCAAGGT
CTTCATCCTGACAGGTGGTCCCGGAACAGGGAAAACCACTGTTATTAACGGAATTATTAAAACCTATGCTGACCTTCATG
GTTTAGACCTCAAAAAGTCTGATTTACCCATTATTTTAGCAGCACCAACGGGACGGGCTGCTCGTCGGATGAACGAACTG
ACCAAGCTCCCTAGTGCCACTATCCATAGACATTTGGGGCTTAATGGCGAGGACGATTTCAAGACCTTAGATGACTATCT
CGATTGCGATTTGATTATCATCGATGAGTTCTCTATGGTTGATACTTGGTTGGCCAATCAACTCTTCGAAAGCATTTCCG
ATACCACTCAAGTAATCATTGTAGGTGACCAAGATCAGCTACCTTCTGTAGGCCCTGGCCAAGTCTTAGCTGACCTTTTG
CAGATTGATGACTTGCCTAAGGTTTCCCTAACCAAAATTTTCAGACAATCTGAGGATTCCACTATTGTTACCTTAGCTAG
CCAGATGCGCCAAGGCCAACTACCCACTGATTTCACAGAGAAAAAAGCTGACCGATCATACTTTGAGGCTAATGCTAACC
ATATTCCACAGATGATCCCTAAAATTGTCTCTGCCGCTATTAAAAGTGGGATCGCTGCTCAGGATGTACAGATTCTGGCC
CCCATGTACCGGGGACAGGCTGGTATCAACAATCTCAATACCATTATGCAGGATCTACTTAATCCCAAAGAAAAAGCCAA
TCAATTTGCCTTTAATGATATTTTCTTCCGTAAGAATGACAAGATTCTCCACCTGGTCAACGATACAGAACTCAATGTCT
TCAATGGCGATATTGGAATCATTACTGATCTCATACCTGGTAAATATACTGAAAGTAAGCAAGACGAAATTTACATGTCC
TTCGATGGCAATGAGGTTATCTATCCTCGTAACGAATGGAATAAGATTACTCTGGCCTATGCCATGTCTATACACAAATC
CCAAGGGAGTGAATTCCCAGTCGTTATCCTTCCCATCACACGCCAAAGTGGGCGTATGCTGCAACGTAACCTCATCTACA
CCGCTATCACACGCGCCAAAAGTAAACTGGTCATGTTGGGGGAAATCGCAGCCTTCGATTATGCCGTTCACAACGAGGGG
GCCAAACGTAATACCTACCTCATCCAACGTTTTGAACAAACTTATACACAAGTTGTTGATAAGTCTGTCGAAAAGAATGT
TAAAAACGAGGGAACAGACGCATCCAATCAAACAGAAAGGAAAAATAGTAGCCCCTCAGAAACCATTGAAAACAAAGACT
TCTCAGAAAATATCAATCCATCCCAAACTCTTATTAACACTTATTCACATCCTGTGGATAAGTCTGTTAACAAACCTGTG
CAAACAGAAGAAAACTATCGTTTAACTGAAGAAAATTGGGCAACTATCGATCCAATGATAGGTCTCAGCGAAGACGATAT
TGCAGCCTTTTTTAACAATAACTAA

Domains

Predicted by InterProScan.

• AAA domain (AAA_30) (331-524)

• UvrD-like helicase C-terminal domain (UvrD_C_2) (659-705)

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (572-638)

• Helix-hairpin-helix containing domain (HHH_RecD2) (147-237)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD/recD2/recDB	Bacillus subtilis subsp. subtilis str. 168	45.114	89.568	0.404