Detailed information
Bioinformatically predicted
Overview
| Name | rarA | Type | Machinery gene |
| Locus tag | H0510_RS08930 | Genome accession | NZ_LR822019 |
| Coordinates | 1710839..1712107 (-) | Length | 422 a.a. |
| NCBI ID | WP_002952183.1 | Uniprot ID | Q5M295 |
| Organism | Streptococcus thermophilus isolate STH_CIRM_772 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 1705839..1717107
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| H0510_RS08900 (STHERMO_1980) | - | 1706143..1707684 (+) | 1542 | WP_002948651.1 | ATP-binding cassette domain-containing protein | - |
| H0510_RS09990 | - | 1707817..1708032 (+) | 216 | WP_041827116.1 | hypothetical protein | - |
| H0510_RS08905 (STHERMO_1981) | - | 1708078..1709055 (+) | 978 | Protein_1710 | replication initiation protein | - |
| H0510_RS08910 (STHERMO_1983) | - | 1709067..1709255 (+) | 189 | WP_000369785.1 | DUF3173 domain-containing protein | - |
| H0510_RS08915 (STHERMO_1984) | - | 1709257..1710396 (+) | 1140 | WP_179966829.1 | site-specific integrase | - |
| H0510_RS08930 (STHERMO_1985) | rarA | 1710839..1712107 (-) | 1269 | WP_002952183.1 | replication-associated recombination protein A | Machinery gene |
| H0510_RS08935 (STHERMO_1986) | rpmB | 1712278..1712466 (+) | 189 | WP_002952184.1 | 50S ribosomal protein L28 | - |
| H0510_RS08940 (STHERMO_1987) | - | 1712593..1712859 (+) | 267 | WP_002952186.1 | IreB family regulatory phosphoprotein | - |
| H0510_RS08945 (STHERMO_1988) | ruvX | 1712859..1713278 (+) | 420 | WP_011681732.1 | Holliday junction resolvase RuvX | - |
| H0510_RS08950 (STHERMO_1989) | - | 1713387..1713692 (+) | 306 | WP_011681733.1 | DUF1292 domain-containing protein | - |
| H0510_RS08955 (STHERMO_1990) | - | 1713905..1715551 (+) | 1647 | WP_011226673.1 | membrane protein | - |
Sequence
Protein
Download Length: 422 a.a. Molecular weight: 46419.92 Da Isoelectric Point: 6.8977
>NTDB_id=1009902 H0510_RS08930 WP_002952183.1 1710839..1712107(-) (rarA) [Streptococcus thermophilus isolate STH_CIRM_772]
MPDNLALRMRPRSISEVIGQKHLVGEGKIIRRMVEANMLSSMILYGPPGIGKTSIASAIAGTTKFAFRTFNATVDSKKRL
QEIAEEAKFSGGLVLLLDEIHRLDKAKQDFLLPLLENGNIIMIGATTENPFFSVTPAIRSRVQIFELEPLSNEDIKEAIL
NVLGDKERGFAFEVHLDDDALDFIATATNGDLRSAYNSLDLAVMSTPASGNGQHHITLDIVENSLQRSYITMDKDGDGHY
DVLSALQKSIRGSDVNASLHYAARLVEAGDLPSLARRLTVIAYEDIGLANPDAQVHTVTALEAAQKIGFPEARILIANVV
IDLALSPKSNSAYKAMDAALADLRKSGNLPIPRHLRDGHYAGSKALGNAQDYKYPHAYPEKWVKQQYLPDKLRGVNYFQP
NETGKYERALGANKERIDKLSR
MPDNLALRMRPRSISEVIGQKHLVGEGKIIRRMVEANMLSSMILYGPPGIGKTSIASAIAGTTKFAFRTFNATVDSKKRL
QEIAEEAKFSGGLVLLLDEIHRLDKAKQDFLLPLLENGNIIMIGATTENPFFSVTPAIRSRVQIFELEPLSNEDIKEAIL
NVLGDKERGFAFEVHLDDDALDFIATATNGDLRSAYNSLDLAVMSTPASGNGQHHITLDIVENSLQRSYITMDKDGDGHY
DVLSALQKSIRGSDVNASLHYAARLVEAGDLPSLARRLTVIAYEDIGLANPDAQVHTVTALEAAQKIGFPEARILIANVV
IDLALSPKSNSAYKAMDAALADLRKSGNLPIPRHLRDGHYAGSKALGNAQDYKYPHAYPEKWVKQQYLPDKLRGVNYFQP
NETGKYERALGANKERIDKLSR
Nucleotide
Download Length: 1269 bp
>NTDB_id=1009902 H0510_RS08930 WP_002952183.1 1710839..1712107(-) (rarA) [Streptococcus thermophilus isolate STH_CIRM_772]
ATGCCAGATAATCTTGCTTTACGCATGCGTCCACGTTCAATTTCAGAGGTGATTGGTCAGAAGCATTTAGTTGGTGAAGG
TAAAATTATTCGCCGTATGGTAGAGGCGAATATGCTGTCGTCAATGATTCTCTACGGACCTCCAGGAATCGGGAAAACCT
CGATAGCCAGTGCTATTGCAGGAACAACAAAATTTGCTTTTAGAACTTTTAATGCCACTGTCGACAGCAAAAAACGTCTA
CAGGAAATTGCAGAAGAGGCTAAATTTTCAGGTGGTTTAGTTCTACTTCTAGATGAGATCCATCGTTTGGATAAAGCGAA
ACAAGATTTTTTGTTACCATTATTAGAGAACGGAAATATTATCATGATTGGTGCCACAACCGAGAATCCGTTTTTTTCTG
TAACACCAGCCATCCGTAGCCGTGTACAAATATTTGAGTTAGAACCACTCTCTAATGAAGATATCAAGGAAGCTATTTTG
AATGTTCTAGGGGACAAGGAGCGTGGCTTCGCCTTTGAGGTTCACTTAGATGATGATGCTCTAGATTTTATTGCGACAGC
TACTAATGGTGATTTACGATCGGCATATAATTCTTTGGATCTGGCTGTCATGTCGACACCAGCTTCAGGAAATGGTCAGC
ATCATATTACCTTAGACATAGTGGAAAATAGCTTACAACGCAGTTATATTACTATGGATAAAGACGGTGATGGGCACTAT
GATGTCCTTTCTGCCTTGCAAAAATCTATTCGAGGATCTGATGTTAATGCCAGTCTTCACTATGCGGCACGTTTGGTTGA
GGCAGGGGATTTGCCTAGTCTAGCACGTCGCTTGACTGTGATTGCCTATGAGGATATTGGTTTAGCTAATCCAGATGCAC
AAGTTCACACGGTCACAGCCTTGGAAGCTGCACAGAAAATAGGTTTTCCGGAGGCACGTATTTTGATTGCCAACGTAGTT
ATTGACTTAGCATTATCACCTAAGTCGAATTCGGCTTATAAGGCAATGGATGCTGCCCTGGCGGATCTTAGAAAGTCTGG
GAATTTACCTATTCCACGTCATCTGAGAGATGGACACTATGCTGGAAGTAAGGCACTGGGTAATGCACAAGATTATAAGT
ATCCACATGCCTATCCTGAAAAGTGGGTTAAGCAACAATACCTTCCAGATAAATTAAGAGGAGTCAATTATTTCCAACCT
AATGAAACTGGGAAATACGAAAGAGCTCTTGGAGCTAATAAAGAACGAATCGATAAGTTATCTAGATAA
ATGCCAGATAATCTTGCTTTACGCATGCGTCCACGTTCAATTTCAGAGGTGATTGGTCAGAAGCATTTAGTTGGTGAAGG
TAAAATTATTCGCCGTATGGTAGAGGCGAATATGCTGTCGTCAATGATTCTCTACGGACCTCCAGGAATCGGGAAAACCT
CGATAGCCAGTGCTATTGCAGGAACAACAAAATTTGCTTTTAGAACTTTTAATGCCACTGTCGACAGCAAAAAACGTCTA
CAGGAAATTGCAGAAGAGGCTAAATTTTCAGGTGGTTTAGTTCTACTTCTAGATGAGATCCATCGTTTGGATAAAGCGAA
ACAAGATTTTTTGTTACCATTATTAGAGAACGGAAATATTATCATGATTGGTGCCACAACCGAGAATCCGTTTTTTTCTG
TAACACCAGCCATCCGTAGCCGTGTACAAATATTTGAGTTAGAACCACTCTCTAATGAAGATATCAAGGAAGCTATTTTG
AATGTTCTAGGGGACAAGGAGCGTGGCTTCGCCTTTGAGGTTCACTTAGATGATGATGCTCTAGATTTTATTGCGACAGC
TACTAATGGTGATTTACGATCGGCATATAATTCTTTGGATCTGGCTGTCATGTCGACACCAGCTTCAGGAAATGGTCAGC
ATCATATTACCTTAGACATAGTGGAAAATAGCTTACAACGCAGTTATATTACTATGGATAAAGACGGTGATGGGCACTAT
GATGTCCTTTCTGCCTTGCAAAAATCTATTCGAGGATCTGATGTTAATGCCAGTCTTCACTATGCGGCACGTTTGGTTGA
GGCAGGGGATTTGCCTAGTCTAGCACGTCGCTTGACTGTGATTGCCTATGAGGATATTGGTTTAGCTAATCCAGATGCAC
AAGTTCACACGGTCACAGCCTTGGAAGCTGCACAGAAAATAGGTTTTCCGGAGGCACGTATTTTGATTGCCAACGTAGTT
ATTGACTTAGCATTATCACCTAAGTCGAATTCGGCTTATAAGGCAATGGATGCTGCCCTGGCGGATCTTAGAAAGTCTGG
GAATTTACCTATTCCACGTCATCTGAGAGATGGACACTATGCTGGAAGTAAGGCACTGGGTAATGCACAAGATTATAAGT
ATCCACATGCCTATCCTGAAAAGTGGGTTAAGCAACAATACCTTCCAGATAAATTAAGAGGAGTCAATTATTTCCAACCT
AATGAAACTGGGAAATACGAAAGAGCTCTTGGAGCTAATAAAGAACGAATCGATAAGTTATCTAGATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| rarA | Bacillus subtilis subsp. subtilis str. 168 |
59.666 |
99.289 |
0.592 |