Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   ABFV67_RS00840 Genome accession   NZ_CP158116
Coordinates   178316..179035 (-) Length   239 a.a.
NCBI ID   WP_161425422.1    Uniprot ID   -
Organism   Vibrio metschnikovii strain IS021     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 173316..184035
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABFV67_RS00810 (ABFV67_00810) gspL 173523..174749 (+) 1227 WP_332396416.1 type II secretion system protein GspL -
  ABFV67_RS00815 (ABFV67_00815) - 174749..175243 (+) 495 WP_040903895.1 type II secretion system protein M -
  ABFV67_RS00820 (ABFV67_00820) - 175245..176003 (+) 759 WP_158144603.1 type II secretion system protein N -
  ABFV67_RS00825 (ABFV67_00825) cysQ 176054..176881 (-) 828 WP_004394385.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  ABFV67_RS00830 (ABFV67_00830) nudE 176890..177450 (-) 561 WP_154169909.1 ADP compounds hydrolase NudE -
  ABFV67_RS00835 (ABFV67_00835) nfuA 177641..178231 (-) 591 WP_050782704.1 Fe-S biogenesis protein NfuA -
  ABFV67_RS00840 (ABFV67_00840) comF 178316..179035 (-) 720 WP_161425422.1 ComF family protein Machinery gene
  ABFV67_RS00845 (ABFV67_00845) bioH 179128..179904 (+) 777 WP_154169911.1 pimeloyl-ACP methyl ester esterase BioH -
  ABFV67_RS00850 (ABFV67_00850) - 180026..180496 (+) 471 WP_332396415.1 ATP-dependent Lon protease -
  ABFV67_RS00855 (ABFV67_00855) - 180791..183112 (-) 2322 WP_350006931.1 Tex family protein -
  ABFV67_RS00860 (ABFV67_00860) greB 183347..183823 (+) 477 WP_154169919.1 transcription elongation factor GreB -

Sequence

Protein


Download         Length: 239 a.a.        Molecular weight: 27504.76 Da        Isoelectric Point: 8.6674

>NTDB_id=1009803 ABFV67_RS00840 WP_161425422.1 178316..179035(-) (comF) [Vibrio metschnikovii strain IS021]
MSMWRDRISTITHAWLTPTCSLCHLPLEPQAQHGTCHACQAWYAPSLRCQRCGLPCLTITPQCGQCLRSPPPWQRLFCIG
DYRFPLSHAIHQLKYQRQFWQARHLAARLAECITEPAPLITCVPLHWRRQWQRGFNQSERLARPLAKHVGSQFDPYLFTR
TRSTPAQQQLTKSQREKNLSGAFQRLSIPHVNHVAIVDDVVTTGSTIRQLCDLLLEVGIERIDIYCLCRTPEPSDAFQP

Nucleotide


Download         Length: 720 bp        

>NTDB_id=1009803 ABFV67_RS00840 WP_161425422.1 178316..179035(-) (comF) [Vibrio metschnikovii strain IS021]
ATGTCAATGTGGCGAGATCGGATATCGACTATCACCCACGCTTGGCTCACGCCAACCTGCAGCTTATGCCATCTGCCTTT
AGAGCCTCAAGCGCAGCATGGTACTTGCCACGCCTGCCAAGCTTGGTATGCTCCCAGCCTTCGTTGCCAGCGCTGTGGTT
TACCTTGCCTAACCATCACTCCCCAATGTGGTCAATGCTTACGTTCCCCTCCCCCTTGGCAACGGCTGTTTTGCATCGGT
GACTACCGATTCCCATTGAGTCACGCCATTCATCAACTTAAATATCAGCGTCAGTTTTGGCAAGCACGTCATTTAGCCGC
TCGACTCGCTGAATGCATCACTGAGCCAGCTCCGCTGATCACTTGCGTCCCATTACACTGGCGCAGACAATGGCAAAGAG
GGTTTAATCAAAGCGAGCGTCTTGCTCGCCCCCTTGCCAAGCACGTAGGTAGCCAGTTTGACCCGTATCTGTTTACCCGC
ACTCGCTCCACTCCCGCTCAACAACAATTAACCAAATCACAGCGTGAGAAAAATTTATCTGGTGCATTTCAACGTCTATC
GATTCCACACGTTAACCATGTCGCTATCGTCGACGATGTGGTCACTACCGGTAGCACTATCCGACAATTATGTGATTTAC
TGCTTGAAGTTGGCATCGAAAGGATTGATATTTATTGCTTATGCCGCACTCCTGAGCCGAGCGATGCATTCCAGCCATAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(140-232)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

60.593

98.745

0.598
  comF Vibrio campbellii strain DS40M4

46.781

97.49

0.456

Multiple sequence alignment