Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGE   Type   Machinery gene
Locus tag   H0511_RS08710 Genome accession   NZ_LR822017
Coordinates   1706855..1707148 (-) Length   97 a.a.
NCBI ID   WP_179972344.1    Uniprot ID   -
Organism   Streptococcus thermophilus isolate STH_CIRM_336     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1701855..1712148
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0511_RS08675 (STHERMO_1962) - 1702256..1702699 (-) 444 WP_011681680.1 hypothetical protein -
  H0511_RS10230 (STHERMO_1963) - 1702773..1703198 (-) 426 WP_014608739.1 CPBP family intramembrane glutamic endopeptidase -
  H0511_RS10235 (STHERMO_1964) - 1703155..1703430 (-) 276 WP_011681681.1 hypothetical protein -
  H0511_RS08685 - 1703442..1703640 (-) 199 Protein_1681 helix-turn-helix transcriptional regulator -
  H0511_RS08690 (STHERMO_1966) - 1703889..1705082 (-) 1194 WP_014608740.1 acetate kinase -
  H0511_RS08695 (STHERMO_1967) comGH 1705138..1706094 (-) 957 WP_011226622.1 class I SAM-dependent methyltransferase Machinery gene
  H0511_RS08700 (STHERMO_1968) comGG 1706139..1706456 (-) 318 WP_011681685.1 competence type IV pilus minor pilin ComGG Machinery gene
  H0511_RS08705 (STHERMO_1969) comGF 1706434..1706871 (-) 438 WP_179974042.1 competence type IV pilus minor pilin ComGF Machinery gene
  H0511_RS08710 (STHERMO_1970) comGE 1706855..1707148 (-) 294 WP_179972344.1 competence type IV pilus minor pilin ComGE Machinery gene
  H0511_RS08715 (STHERMO_1971) comGD 1707120..1707548 (-) 429 WP_269473123.1 competence type IV pilus minor pilin ComGD Machinery gene
  H0511_RS08720 (STHERMO_1972) comGC 1707508..1707834 (-) 327 WP_179972346.1 competence type IV pilus major pilin ComGC Machinery gene
  H0511_RS08725 (STHERMO_1973) comGB 1707831..1708931 (-) 1101 WP_179974043.1 competence type IV pilus assembly protein ComGB Machinery gene
  H0511_RS08730 (STHERMO_1974) comGA/cglA/cilD 1708813..1709754 (-) 942 WP_179974044.1 competence type IV pilus ATPase ComGA Machinery gene
  H0511_RS08735 (STHERMO_1975) - 1709835..1710197 (-) 363 WP_179972348.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10830.71 Da        Isoelectric Point: 10.4561

>NTDB_id=1009796 H0511_RS08710 WP_179972344.1 1706855..1707148(-) (comGE) [Streptococcus thermophilus isolate STH_CIRM_336]
MVNIKRRSLRGYILIESLVAMAVLVLVSSLILEQINTNRRLMADNLHQQDVLSVATMAVQTKQDQLTLNGIAVTVKRSQQ
GITVYESGKEIIHVSKQ

Nucleotide


Download         Length: 294 bp        

>NTDB_id=1009796 H0511_RS08710 WP_179972344.1 1706855..1707148(-) (comGE) [Streptococcus thermophilus isolate STH_CIRM_336]
GTGGTAAATATAAAAAGACGATCTCTTAGAGGATATATTCTTATTGAAAGCCTGGTAGCTATGGCTGTTTTAGTACTTGT
CAGCAGTCTGATATTGGAACAAATTAATACCAACCGCAGACTAATGGCTGATAATCTCCATCAACAAGATGTCTTGAGTG
TGGCAACAATGGCAGTTCAGACCAAGCAAGACCAGTTAACGCTAAATGGCATAGCGGTGACAGTTAAACGTAGCCAGCAA
GGTATCACGGTTTATGAATCGGGAAAGGAGATTATTCATGTATCTAAGCAGTAA

Domains

Predicted by InterProScan.

Type II secretory pathway pseudopilin (ComGE)

(13-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGE Streptococcus mutans UA140

42.268

100

0.423
  comGE Streptococcus mutans UA159

42.268

100

0.423