Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   H0511_RS02825 Genome accession   NZ_LR822017
Coordinates   535243..537030 (+) Length   595 a.a.
NCBI ID   WP_179974324.1    Uniprot ID   -
Organism   Streptococcus thermophilus isolate STH_CIRM_336     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 530243..542030
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0511_RS02820 (STHERMO_0596) rcrP 533494..535230 (+) 1737 WP_179974323.1 ABC transporter ATP-binding protein Regulator
  H0511_RS02825 (STHERMO_0597) rcrQ 535243..537030 (+) 1788 WP_179974324.1 ABC transporter ATP-binding protein Regulator
  H0511_RS02830 (STHERMO_0598) queA 537128..538171 (-) 1044 WP_179974325.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  H0511_RS02835 (STHERMO_0599) - 538321..539022 (+) 702 WP_024704019.1 glucosamine-6-phosphate deaminase -
  H0511_RS02840 (STHERMO_0600) - 539212..540195 (+) 984 WP_179974326.1 rhodanese-related sulfurtransferase -
  H0511_RS02845 (STHERMO_0601) - 540374..540571 (+) 198 WP_179974327.1 helix-turn-helix transcriptional regulator -
  H0511_RS02850 (STHERMO_0602) - 540585..541040 (+) 456 WP_179974328.1 DUF6773 family protein -
  H0511_RS02855 (STHERMO_0603) - 541161..541931 (+) 771 WP_179974329.1 nucleoside phosphorylase -

Sequence

Protein


Download         Length: 595 a.a.        Molecular weight: 66682.91 Da        Isoelectric Point: 5.2419

>NTDB_id=1009735 H0511_RS02825 WP_179974324.1 535243..537030(+) (rcrQ) [Streptococcus thermophilus isolate STH_CIRM_336]
MNDHKKKTTHSSGFGRLWSYLQVYRFPLYLAIFLKIISVIMSVIEPVVIGLAITELTKNTLDIIKGVAGAHINVSYVGLV
LVFYLLRGLIYELASYYSNYFMTNAVQATVQDMRNEMIEKINRTSVSYFDKQQFGDLLGRFTSDVETVSNALQQSFLQVV
NAIFTLALVIGIVLYLNLQLGAVVVITIMISYFGARFIMSKSQPYFKQQAHALGTLNGFVQENLTGFNVIKLFGREDRSL
DDFKEITEDLQKVGFKANFISGLMMPFLNGLSDLTYLIVAVLGGLQVLAGRLTIGNMQAFVQYVWQINQPIQNLTQLAGQ
LQSAKSSLDRIFQLMDEPDEANDATEVLEGDLTGQVIFNHVDFQYVADKPLIRDFNLEVNPGEMVAIVGPTGAGKSTIIN
LLMRFYDVTAGYISVDGHDIRNLSRKDYRKQFGMVLQDAWLFEGTIKENLRFGNLEATDEEIVEAAKAANVDHFIRTLPG
GYNMEMNQESSNVSLGQKQLLTIARALLADPKILILDEATSSVDTRLELLIQKAMKALMQGRTSFVIAHRLSTIQEADKI
LVLKDGQIIEQGNHESLLADKGFYYDLYNSQFAEK

Nucleotide


Download         Length: 1788 bp        

>NTDB_id=1009735 H0511_RS02825 WP_179974324.1 535243..537030(+) (rcrQ) [Streptococcus thermophilus isolate STH_CIRM_336]
ATGAATGATCATAAAAAGAAAACAACTCATTCCTCAGGTTTTGGCCGCCTTTGGTCATACCTGCAGGTTTATCGTTTCCC
ACTTTACTTAGCTATTTTCCTGAAAATTATTAGTGTCATCATGAGTGTTATTGAGCCGGTGGTCATTGGTTTAGCCATTA
CGGAATTGACTAAAAATACACTGGACATCATAAAGGGGGTAGCAGGTGCTCATATCAACGTGTCCTACGTTGGCTTAGTT
TTGGTCTTTTACCTCTTGCGTGGTCTCATCTATGAGTTGGCTTCTTACTATTCCAACTATTTTATGACCAATGCTGTGCA
AGCAACGGTTCAGGATATGCGAAATGAGATGATTGAGAAAATCAATCGTACCTCAGTGTCATACTTTGATAAGCAACAAT
TTGGAGACCTTTTAGGTCGCTTTACTAGTGACGTCGAGACAGTTTCAAATGCCTTGCAGCAGTCATTCTTGCAGGTTGTC
AACGCCATCTTTACTCTAGCCTTGGTTATTGGGATAGTGCTTTACCTTAATCTTCAGTTGGGAGCTGTGGTTGTTATCAC
TATTATGATTTCTTACTTTGGTGCTCGCTTCATTATGAGTAAATCTCAACCTTACTTTAAGCAGCAGGCTCACGCCCTAG
GTACTCTTAACGGTTTTGTTCAGGAAAATCTGACTGGTTTCAATGTGATTAAACTTTTTGGGCGTGAGGATAGATCTTTA
GACGACTTTAAAGAAATTACGGAAGACCTTCAAAAGGTAGGTTTTAAGGCCAATTTCATTTCAGGCCTCATGATGCCTTT
CCTTAATGGTTTATCTGACTTAACCTATCTAATTGTTGCCGTCCTAGGTGGTTTGCAAGTCTTGGCTGGTCGCTTGACGA
TTGGTAATATGCAGGCTTTCGTTCAGTACGTTTGGCAAATTAATCAACCTATTCAGAACTTGACTCAGTTGGCTGGACAA
TTGCAGAGTGCTAAATCTTCCTTGGACCGTATTTTTCAACTAATGGATGAACCAGACGAGGCTAATGATGCTACTGAGGT
GCTTGAAGGAGATTTAACTGGCCAAGTTATCTTTAATCATGTGGACTTCCAGTATGTAGCTGATAAACCTTTGATTCGTG
ACTTTAATCTTGAGGTTAATCCTGGTGAAATGGTGGCTATTGTCGGTCCTACCGGTGCTGGAAAATCAACTATTATCAAT
CTTCTCATGCGTTTCTATGATGTTACTGCAGGTTATATCTCGGTTGATGGTCATGATATACGCAACTTGTCGCGTAAAGA
TTATCGTAAACAGTTTGGTATGGTGCTTCAGGATGCTTGGCTCTTTGAAGGAACTATCAAGGAAAATCTTCGTTTTGGTA
ATCTTGAGGCAACTGATGAAGAAATTGTTGAAGCAGCGAAGGCTGCCAATGTGGATCACTTTATCCGTACACTGCCTGGT
GGCTACAACATGGAAATGAACCAGGAATCAAGTAACGTTTCACTGGGACAAAAGCAACTTTTGACCATAGCCCGTGCACT
TTTGGCTGACCCTAAAATCTTGATTTTGGACGAGGCAACCTCATCAGTTGATACCCGTCTGGAACTCTTGATTCAAAAAG
CCATGAAAGCTCTCATGCAAGGTCGAACAAGTTTTGTCATTGCTCACCGTTTATCAACTATCCAAGAAGCAGACAAGATT
TTGGTCCTTAAAGATGGACAAATCATCGAACAAGGGAACCATGAATCCCTCCTTGCAGATAAAGGTTTCTATTACGATTT
GTATAATAGTCAATTTGCAGAGAAATAA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(29-310)

ABC transporter (ABC_tran)

(373-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

42.689

100

0.427