Detailed information NTG0100933

Bioinformatically predicted

Overview

• Name: rarA
• Type: Machinery gene
• Locus tag: D934_RS04520
• Genome accession: NZ_CP006696
• Coordinates: 1061956..1063323 (+)
• Length: 455 a.a.
• NCBI ID: WP_020850922.1
• Uniprot ID: -
• Organism: Xylella fastidiosa subsp. sandyi Ann-1
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1056956..1068323

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D934_RS04510 (D934_04885)	-	1058711..1060621 (+)	1911	WP_020850921.1	DUF3857 domain-containing transglutaminase family protein	-
D934_RS04515 (D934_04890)	lolA	1061199..1061825 (+)	627	WP_004089126.1	outer membrane lipoprotein chaperone LolA	-
D934_RS04520 (D934_04895)	rarA	1061956..1063323 (+)	1368	WP_020850922.1	replication-associated recombination protein A	Machinery gene
D934_RS04525 (D934_04900)	crcB	1063484..1063885 (+)	402	WP_020850923.1	fluoride efflux transporter CrcB	-
D934_RS04535 (D934_04910)	-	1064559..1066055 (+)	1497	WP_020850924.1	ATP-binding protein	-
D934_RS04540 (D934_04915)	folK	1066181..1066696 (+)	516	WP_024749287.1	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	-
D934_RS04545 (D934_04920)	-	1066707..1067444 (-)	738	WP_020850926.1	pteridine reductase	-

Sequence

Protein

• Length: 455 a.a.
• Molecular weight: 50826.09 Da
• Isoelectric Point: 6.8834

>NTDB_id=100933 D934_RS04520 WP_020850922.1 1061956..1063323(+) (rarA) [Xylella fastidiosa subsp. sandyi Ann-1]
MTRQRFPTLQHDLLGVAPLLQPLAERMRPRTLHEMVGQKRLLAPDRALHRAVASGHVHSMILWGPPGCGKTTLSLLLAHY
IDAEFRSVSAVLSGLPEVRQILAEAAQRFSEGRRTVLFVDEVHRFNKMQQDAFLPHIERGSIIFVGATTENPSFELNSAL
LSRCRVHVLEAVSSQDIVVALQRALQDTERGLGGQKIEVSEAYLLEIAKAADGDVRRALTLLEIAAELAQDEDEQITADL
LSQVLADRSRRFDKRGEQFYDQISALHKSVRSSNPDAALYWLLRMLDGGCDPIYLARRLTRMAIEDIGLADPRAQSMALE
AWDIYERLGSPEGELAFAQLVLYLASTAKSNAGYVAFNVAKEDIRQTGTQDVPLRLRNAPTRLMKSLGYGIGYQYDHDAE
NGVALEQTCFPDALGERIYYQPVSRGLEIKLKEKLDQLRAARAQIQADKPQRPRA

Nucleotide

• Length: 1368 bp

>NTDB_id=100933 D934_RS04520 WP_020850922.1 1061956..1063323(+) (rarA) [Xylella fastidiosa subsp. sandyi Ann-1]
GTGACACGACAGCGCTTTCCGACTCTTCAGCATGATTTGCTTGGTGTGGCTCCTCTCTTGCAGCCACTGGCCGAGCGCAT
GCGTCCTCGTACTCTTCATGAGATGGTAGGACAGAAGCGCTTGCTTGCCCCAGATCGTGCATTGCATCGTGCGGTGGCTT
CCGGGCATGTGCATTCCATGATTTTGTGGGGACCGCCAGGGTGCGGCAAGACGACATTGTCATTGCTGTTAGCGCATTAC
ATTGATGCAGAATTTCGGTCAGTCTCGGCTGTTCTTTCGGGGTTGCCGGAGGTGCGTCAGATCTTGGCTGAGGCTGCGCA
GCGTTTTTCTGAAGGACGCCGCACCGTCTTGTTCGTGGACGAAGTGCATCGTTTTAACAAGATGCAGCAGGATGCGTTTC
TGCCGCATATCGAGCGTGGTTCCATTATTTTCGTTGGTGCCACTACTGAGAATCCATCCTTCGAATTGAACTCGGCGTTA
CTGTCGCGTTGCCGTGTCCACGTGTTGGAGGCAGTGTCGTCACAGGATATCGTTGTGGCATTGCAGCGGGCGTTGCAGGA
TACGGAGCGGGGTTTGGGTGGGCAGAAGATTGAAGTGTCTGAAGCCTATCTGTTGGAGATTGCCAAGGCTGCAGATGGTG
ACGTGCGTCGTGCGCTCACCTTGTTGGAGATTGCTGCTGAGCTTGCCCAGGATGAGGATGAGCAGATAACCGCTGACTTG
CTTTCGCAAGTGCTTGCCGATCGTAGTCGGCGCTTCGACAAACGGGGGGAGCAGTTCTATGACCAGATTTCGGCCTTGCA
CAAGAGTGTACGTAGTTCCAACCCGGATGCGGCGTTGTATTGGTTGCTGCGTATGCTGGATGGTGGTTGTGATCCTATCT
ACTTGGCGCGGCGCTTGACCCGCATGGCGATTGAGGATATTGGTTTGGCTGATCCGCGTGCACAGTCGATGGCTCTGGAG
GCTTGGGACATCTATGAGCGGTTGGGTAGCCCGGAGGGAGAGCTGGCGTTCGCACAGTTGGTGCTGTACTTGGCAAGTAC
TGCAAAATCGAATGCTGGCTATGTTGCGTTCAATGTGGCCAAGGAGGACATTCGCCAGACGGGTACCCAGGATGTTCCGC
TACGCCTGCGTAATGCACCGACCAGACTCATGAAAAGTCTCGGTTACGGTATCGGATATCAGTACGATCATGATGCTGAG
AACGGTGTTGCGCTGGAACAGACCTGTTTTCCCGATGCGCTGGGGGAGCGTATTTACTACCAACCGGTATCCCGCGGTCT
GGAGATTAAGCTGAAGGAGAAGTTGGACCAGTTGCGTGCAGCACGTGCTCAGATTCAAGCGGATAAGCCGCAGCGGCCGC
GTGCATAG

Domains

Predicted by InterProScan.

• ATPase family associated with various cellular activities (AAA) (AAA) (60-168)

• MgsA AAA+ ATPase C terminal (MgsA_C) (273-438)

• AAA C-terminal domain (AAA_assoc_2) (194-271)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rarA	Bacillus subtilis subsp. subtilis str. 168	38.771	92.967	0.36