Detailed information
Bioinformatically predicted
Overview
| Name | rarA | Type | Machinery gene |
| Locus tag | H0504_RS08980 | Genome accession | NZ_LR822011 |
| Coordinates | 1732383..1733651 (-) | Length | 422 a.a. |
| NCBI ID | WP_002952183.1 | Uniprot ID | Q5M295 |
| Organism | Streptococcus thermophilus isolate STH_CIRM_23 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 1727383..1738651
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| H0504_RS08950 (STHERMO_2008) | - | 1727687..1729228 (+) | 1542 | WP_002948651.1 | ATP-binding cassette domain-containing protein | - |
| H0504_RS10060 | - | 1729361..1729576 (+) | 216 | WP_041828353.1 | hypothetical protein | - |
| H0504_RS08955 (STHERMO_2009) | - | 1729622..1730599 (+) | 978 | WP_011226670.1 | replication initiation protein | - |
| H0504_RS08960 (STHERMO_2010) | - | 1730611..1730799 (+) | 189 | WP_000369785.1 | DUF3173 domain-containing protein | - |
| H0504_RS08965 (STHERMO_2011) | - | 1730801..1731940 (+) | 1140 | WP_011226671.1 | site-specific integrase | - |
| H0504_RS08980 (STHERMO_2012) | rarA | 1732383..1733651 (-) | 1269 | WP_002952183.1 | replication-associated recombination protein A | Machinery gene |
| H0504_RS08985 (STHERMO_2013) | rpmB | 1733822..1734010 (+) | 189 | WP_002952184.1 | 50S ribosomal protein L28 | - |
| H0504_RS08990 (STHERMO_2014) | - | 1734137..1734403 (+) | 267 | WP_002952186.1 | IreB family regulatory phosphoprotein | - |
| H0504_RS08995 (STHERMO_2015) | ruvX | 1734403..1734822 (+) | 420 | WP_002952187.1 | Holliday junction resolvase RuvX | - |
| H0504_RS09000 (STHERMO_2016) | - | 1734931..1735236 (+) | 306 | WP_011681733.1 | DUF1292 domain-containing protein | - |
| H0504_RS09005 (STHERMO_2017) | - | 1735449..1737095 (+) | 1647 | WP_011226673.1 | membrane protein | - |
Sequence
Protein
Download Length: 422 a.a. Molecular weight: 46419.92 Da Isoelectric Point: 6.8977
>NTDB_id=1009290 H0504_RS08980 WP_002952183.1 1732383..1733651(-) (rarA) [Streptococcus thermophilus isolate STH_CIRM_23]
MPDNLALRMRPRSISEVIGQKHLVGEGKIIRRMVEANMLSSMILYGPPGIGKTSIASAIAGTTKFAFRTFNATVDSKKRL
QEIAEEAKFSGGLVLLLDEIHRLDKAKQDFLLPLLENGNIIMIGATTENPFFSVTPAIRSRVQIFELEPLSNEDIKEAIL
NVLGDKERGFAFEVHLDDDALDFIATATNGDLRSAYNSLDLAVMSTPASGNGQHHITLDIVENSLQRSYITMDKDGDGHY
DVLSALQKSIRGSDVNASLHYAARLVEAGDLPSLARRLTVIAYEDIGLANPDAQVHTVTALEAAQKIGFPEARILIANVV
IDLALSPKSNSAYKAMDAALADLRKSGNLPIPRHLRDGHYAGSKALGNAQDYKYPHAYPEKWVKQQYLPDKLRGVNYFQP
NETGKYERALGANKERIDKLSR
MPDNLALRMRPRSISEVIGQKHLVGEGKIIRRMVEANMLSSMILYGPPGIGKTSIASAIAGTTKFAFRTFNATVDSKKRL
QEIAEEAKFSGGLVLLLDEIHRLDKAKQDFLLPLLENGNIIMIGATTENPFFSVTPAIRSRVQIFELEPLSNEDIKEAIL
NVLGDKERGFAFEVHLDDDALDFIATATNGDLRSAYNSLDLAVMSTPASGNGQHHITLDIVENSLQRSYITMDKDGDGHY
DVLSALQKSIRGSDVNASLHYAARLVEAGDLPSLARRLTVIAYEDIGLANPDAQVHTVTALEAAQKIGFPEARILIANVV
IDLALSPKSNSAYKAMDAALADLRKSGNLPIPRHLRDGHYAGSKALGNAQDYKYPHAYPEKWVKQQYLPDKLRGVNYFQP
NETGKYERALGANKERIDKLSR
Nucleotide
Download Length: 1269 bp
>NTDB_id=1009290 H0504_RS08980 WP_002952183.1 1732383..1733651(-) (rarA) [Streptococcus thermophilus isolate STH_CIRM_23]
ATGCCAGATAATCTTGCTTTACGCATGCGTCCACGTTCAATTTCAGAGGTGATTGGTCAGAAGCATTTAGTTGGTGAAGG
TAAAATTATTCGCCGTATGGTAGAGGCGAATATGCTGTCGTCAATGATTCTCTACGGACCTCCAGGAATCGGGAAAACCT
CGATAGCCAGTGCTATTGCAGGAACAACAAAATTTGCTTTTAGAACTTTTAATGCCACTGTCGACAGCAAAAAACGTCTA
CAGGAAATTGCAGAAGAGGCTAAATTTTCAGGTGGTTTAGTTCTACTTCTAGATGAGATCCATCGTTTGGATAAAGCGAA
ACAAGATTTTTTGTTACCATTATTAGAGAACGGAAATATTATCATGATTGGTGCCACAACCGAGAATCCGTTTTTTTCTG
TAACACCAGCCATCCGTAGCCGTGTACAAATATTTGAGTTAGAACCACTCTCTAATGAAGATATCAAGGAAGCTATTTTG
AATGTTCTAGGGGACAAGGAGCGTGGCTTCGCCTTTGAGGTTCACTTAGATGATGATGCTCTAGATTTTATTGCGACAGC
TACTAATGGTGATTTACGATCGGCATATAATTCTTTGGATCTGGCTGTCATGTCGACACCAGCTTCAGGAAATGGTCAGC
ATCATATTACCTTAGACATAGTGGAAAATAGCTTACAACGCAGTTATATTACTATGGATAAAGACGGTGATGGGCACTAT
GATGTCCTTTCTGCCTTGCAAAAATCTATTCGAGGATCTGATGTTAATGCCAGTCTTCACTATGCGGCACGTTTGGTTGA
GGCAGGGGATTTGCCTAGTCTAGCACGTCGCTTGACTGTGATTGCCTATGAGGATATTGGTTTAGCTAATCCAGATGCAC
AAGTTCACACGGTCACAGCCTTGGAAGCTGCACAGAAAATAGGTTTTCCGGAGGCACGTATTTTGATTGCCAACGTAGTT
ATTGACTTAGCATTATCACCTAAGTCGAATTCGGCTTATAAGGCAATGGATGCTGCCCTGGCGGATCTTAGAAAGTCTGG
GAATTTACCTATTCCACGTCATCTGAGAGATGGACACTATGCTGGAAGTAAGGCACTGGGTAATGCACAAGATTATAAGT
ATCCACATGCCTATCCTGAAAAGTGGGTTAAGCAACAATACCTTCCAGATAAATTAAGAGGAGTCAATTATTTCCAACCT
AATGAAACTGGGAAATACGAAAGAGCTCTTGGAGCTAATAAAGAACGAATCGATAAGTTATCTAGATAA
ATGCCAGATAATCTTGCTTTACGCATGCGTCCACGTTCAATTTCAGAGGTGATTGGTCAGAAGCATTTAGTTGGTGAAGG
TAAAATTATTCGCCGTATGGTAGAGGCGAATATGCTGTCGTCAATGATTCTCTACGGACCTCCAGGAATCGGGAAAACCT
CGATAGCCAGTGCTATTGCAGGAACAACAAAATTTGCTTTTAGAACTTTTAATGCCACTGTCGACAGCAAAAAACGTCTA
CAGGAAATTGCAGAAGAGGCTAAATTTTCAGGTGGTTTAGTTCTACTTCTAGATGAGATCCATCGTTTGGATAAAGCGAA
ACAAGATTTTTTGTTACCATTATTAGAGAACGGAAATATTATCATGATTGGTGCCACAACCGAGAATCCGTTTTTTTCTG
TAACACCAGCCATCCGTAGCCGTGTACAAATATTTGAGTTAGAACCACTCTCTAATGAAGATATCAAGGAAGCTATTTTG
AATGTTCTAGGGGACAAGGAGCGTGGCTTCGCCTTTGAGGTTCACTTAGATGATGATGCTCTAGATTTTATTGCGACAGC
TACTAATGGTGATTTACGATCGGCATATAATTCTTTGGATCTGGCTGTCATGTCGACACCAGCTTCAGGAAATGGTCAGC
ATCATATTACCTTAGACATAGTGGAAAATAGCTTACAACGCAGTTATATTACTATGGATAAAGACGGTGATGGGCACTAT
GATGTCCTTTCTGCCTTGCAAAAATCTATTCGAGGATCTGATGTTAATGCCAGTCTTCACTATGCGGCACGTTTGGTTGA
GGCAGGGGATTTGCCTAGTCTAGCACGTCGCTTGACTGTGATTGCCTATGAGGATATTGGTTTAGCTAATCCAGATGCAC
AAGTTCACACGGTCACAGCCTTGGAAGCTGCACAGAAAATAGGTTTTCCGGAGGCACGTATTTTGATTGCCAACGTAGTT
ATTGACTTAGCATTATCACCTAAGTCGAATTCGGCTTATAAGGCAATGGATGCTGCCCTGGCGGATCTTAGAAAGTCTGG
GAATTTACCTATTCCACGTCATCTGAGAGATGGACACTATGCTGGAAGTAAGGCACTGGGTAATGCACAAGATTATAAGT
ATCCACATGCCTATCCTGAAAAGTGGGTTAAGCAACAATACCTTCCAGATAAATTAAGAGGAGTCAATTATTTCCAACCT
AATGAAACTGGGAAATACGAAAGAGCTCTTGGAGCTAATAAAGAACGAATCGATAAGTTATCTAGATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| rarA | Bacillus subtilis subsp. subtilis str. 168 |
59.666 |
99.289 |
0.592 |