Detailed information NTG1009260

Bioinformatically predicted

Overview

• Name: codY
• Type: Regulator
• Locus tag: ABL091_RS08200
• Genome accession: NZ_CP157944
• Coordinates: 1628028..1628807 (+)
• Length: 259 a.a.
• NCBI ID: WP_003154263.1
• Uniprot ID: I2C545
• Organism: Bacillus velezensis strain B6
• Function: repression of comK (predicted from homology) Competence regulation

Genomic Context

Location: 1623028..1633807

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABL091_RS08180 (ABL091_08175)	trmFO	1623715..1625022 (+)	1308	WP_012117550.1	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	-
ABL091_RS08185 (ABL091_08180)	xerC	1625092..1626009 (+)	918	WP_007409774.1	tyrosine recombinase XerC	-
ABL091_RS08190 (ABL091_08185)	hslV	1626025..1626570 (+)	546	WP_022553348.1	ATP-dependent protease subunit HslV	-
ABL091_RS08195 (ABL091_08190)	hslU	1626578..1627990 (+)	1413	WP_254894347.1	HslU--HslV peptidase ATPase subunit	-
ABL091_RS08200 (ABL091_08195)	codY	1628028..1628807 (+)	780	WP_003154263.1	GTP-sensing pleiotropic transcriptional regulator CodY	Regulator
ABL091_RS08205 (ABL091_08200)	flgB	1629161..1629550 (+)	390	WP_089072433.1	flagellar basal body rod protein FlgB	-
ABL091_RS08210 (ABL091_08205)	flgC	1629550..1630002 (+)	453	WP_003154259.1	flagellar basal body rod protein FlgC	-
ABL091_RS08215 (ABL091_08210)	fliE	1630013..1630333 (+)	321	WP_007409777.1	flagellar hook-basal body complex protein FliE	-
ABL091_RS08220 (ABL091_08215)	fliF	1630376..1631986 (+)	1611	WP_022553346.1	flagellar basal-body MS-ring/collar protein FliF	-
ABL091_RS08225 (ABL091_08220)	fliG	1631999..1633015 (+)	1017	WP_003154256.1	flagellar motor switch protein FliG	-
ABL091_RS08230 (ABL091_08225)	fliH	1633008..1633763 (+)	756	WP_022553345.1	flagellar assembly protein FliH	-

Sequence

Protein

• Length: 259 a.a.
• Molecular weight: 29056.24 Da
• Isoelectric Point: 4.6017

>NTDB_id=1009260 ABL091_RS08200 WP_003154263.1 1628028..1628807(+) (codY) [Bacillus velezensis strain B6]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide

• Length: 780 bp

>NTDB_id=1009260 ABL091_RS08200 WP_003154263.1 1628028..1628807(+) (codY) [Bacillus velezensis strain B6]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTAGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCAGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAACTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACA
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

• CodY GAF-like domain (CodY) (3-178)

• CodY helix-turn-helix domain (HTH_CodY) (198-255)

3D structure

• AlphaFold DB: I2C545

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
codY	Bacillus subtilis subsp. subtilis str. 168	99.228	100	0.992
codY	Lactococcus lactis subsp. lactis strain DGCC12653	47.843	98.456	0.471