Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   H0504_RS01450 Genome accession   NZ_LR822011
Coordinates   278506..279249 (+) Length   247 a.a.
NCBI ID   WP_011226469.1    Uniprot ID   Q5M2Y9
Organism   Streptococcus thermophilus isolate STH_CIRM_23     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 273506..284249
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0504_RS01430 (STHERMO_0302) dinB 274442..275545 (+) 1104 WP_011226472.1 DNA polymerase IV -
  H0504_RS01435 (STHERMO_0303) - 275843..276076 (+) 234 WP_002947030.1 hypothetical protein -
  H0504_RS01440 (STHERMO_0305) - 276536..277366 (+) 831 WP_041828322.1 transporter substrate-binding domain-containing protein -
  H0504_RS01445 (STHERMO_0306) - 277760..278506 (+) 747 WP_095559509.1 amino acid ABC transporter permease -
  H0504_RS01450 (STHERMO_0307) amiE 278506..279249 (+) 744 WP_011226469.1 amino acid ABC transporter ATP-binding protein Regulator
  H0504_RS01455 (STHERMO_0308) - 279464..279688 (+) 225 WP_011226468.1 DUF4059 family protein -
  H0504_RS01460 (STHERMO_0309) trxB 279721..280674 (+) 954 WP_255136104.1 thioredoxin-disulfide reductase -
  H0504_RS01465 (STHERMO_0310) rsmD 280765..281364 (+) 600 Protein_249 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  H0504_RS01470 (STHERMO_0311) coaD 281398..281895 (+) 498 WP_011226465.1 pantetheine-phosphate adenylyltransferase -
  H0504_RS01475 (STHERMO_0312) sepM 281873..282949 (+) 1077 WP_011226464.1 SepM family pheromone-processing serine protease Regulator
  H0504_RS01480 (STHERMO_0313) - 283034..283978 (+) 945 WP_011226463.1 TIGR01212 family radical SAM protein -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 27763.89 Da        Isoelectric Point: 5.4718

>NTDB_id=1009210 H0504_RS01450 WP_011226469.1 278506..279249(+) (amiE) [Streptococcus thermophilus isolate STH_CIRM_23]
MISIKNLTKEFSGQKVLDGIDIDIEKGEVVALVGASGAGKSTILRCLNYLEQPDSGTIAIDDFKVDFETITKEQILTLRR
KLAMVFQQFNLFERRTALDNVKEGLKIVKKLSDDEATKIAKEELTKVGLSNRENYYPRHLSGGQKQRVALARALAMRPDV
LLLDEPTSALDPELVGEVEKSIVDAAKSGQTMILVSHDMNFIYQVADKVLFLEKGHILEQGTPDEIFNHPKEERTKEFFA
SYSKQYL

Nucleotide


Download         Length: 744 bp        

>NTDB_id=1009210 H0504_RS01450 WP_011226469.1 278506..279249(+) (amiE) [Streptococcus thermophilus isolate STH_CIRM_23]
ATGATTAGTATCAAAAATTTGACCAAGGAATTTTCAGGACAAAAGGTTCTCGATGGCATCGATATTGACATTGAAAAAGG
TGAAGTTGTGGCTCTTGTTGGTGCCTCTGGTGCAGGGAAGTCGACTATCCTTCGTTGCTTGAACTATTTGGAACAACCTG
ATTCTGGTACTATTGCCATTGATGATTTCAAGGTGGATTTTGAAACAATTACCAAGGAGCAAATCCTTACCCTTCGTCGT
AAGTTGGCCATGGTGTTCCAACAGTTCAACCTCTTTGAACGTCGTACAGCCTTGGATAATGTTAAGGAAGGTCTCAAGAT
TGTTAAGAAACTTTCTGACGACGAAGCTACCAAGATTGCTAAAGAAGAGCTCACTAAGGTTGGGCTTTCTAATCGTGAAA
ATTACTACCCACGTCACTTGTCGGGTGGTCAAAAGCAACGTGTGGCTTTGGCTCGTGCCCTTGCAATGAGGCCTGATGTG
CTCTTGCTTGACGAACCAACATCTGCCCTTGACCCTGAGTTGGTTGGTGAGGTTGAAAAATCAATCGTAGATGCGGCTAA
ATCAGGTCAAACCATGATTTTGGTCAGTCACGACATGAACTTTATTTATCAAGTGGCTGACAAGGTGCTTTTCCTTGAAA
AAGGTCATATCCTTGAACAAGGAACACCTGATGAAATCTTTAACCATCCAAAAGAAGAGCGAACAAAAGAATTCTTCGCT
TCTTATTCAAAACAATATCTTTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(17-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5M2Y9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

33.962

100

0.364