Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   H0503_RS07720 Genome accession   NZ_LR822009
Coordinates   1486126..1486869 (-) Length   247 a.a.
NCBI ID   WP_084829069.1    Uniprot ID   -
Organism   Streptococcus thermophilus isolate STH_CIRM_19     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1481126..1491869
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0503_RS07690 (STHERMO_1718) - 1481397..1482341 (-) 945 WP_011226463.1 TIGR01212 family radical SAM protein -
  H0503_RS07695 (STHERMO_1719) sepM 1482426..1483502 (-) 1077 WP_011681549.1 SepM family pheromone-processing serine protease Regulator
  H0503_RS07700 (STHERMO_1720) coaD 1483480..1483977 (-) 498 WP_011681550.1 pantetheine-phosphate adenylyltransferase -
  H0503_RS07705 (STHERMO_1721) rsmD 1484011..1484610 (-) 600 Protein_1486 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  H0503_RS07710 (STHERMO_1722) trxB 1484701..1485654 (-) 954 WP_255136104.1 thioredoxin-disulfide reductase -
  H0503_RS07715 (STHERMO_1723) - 1485687..1485911 (-) 225 WP_087010135.1 DUF4059 family protein -
  H0503_RS07720 (STHERMO_1724) amiE 1486126..1486869 (-) 744 WP_084829069.1 amino acid ABC transporter ATP-binding protein Regulator
  H0503_RS07725 (STHERMO_1725) - 1486869..1487615 (-) 747 WP_179970821.1 amino acid ABC transporter permease -
  H0503_RS07730 (STHERMO_1726) - 1488011..1488841 (-) 831 WP_041828322.1 transporter substrate-binding domain-containing protein -
  H0503_RS07735 (STHERMO_1728) - 1489311..1489544 (-) 234 WP_084829828.1 hypothetical protein -
  H0503_RS07740 (STHERMO_1729) dinB 1489829..1490932 (-) 1104 WP_084829829.1 DNA polymerase IV -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 27661.80 Da        Isoelectric Point: 5.7786

>NTDB_id=1009062 H0503_RS07720 WP_084829069.1 1486126..1486869(-) (amiE) [Streptococcus thermophilus isolate STH_CIRM_19]
MISIKNLTKEFSGQKVLDGIDIDIEKGEVVALVGASGAGKSTILRCLNYLEQPDSGTIAIDDFKVDFGTITKEQILTLRR
KLAMVFQQFNLFERRTALDNVKEGLKIVKKLSDDEATKIAKEELAKVGLSNRENYYPRHLSGGQKQRVALARALAMRPDV
LLLDEPTSALDPELVGEVEKSIVDAAKSGQTMILVSHDMNFIYQVADKVLFLEKGHILEQGTPDEIFNHPKEERTKEFFA
SYSKQYL

Nucleotide


Download         Length: 744 bp        

>NTDB_id=1009062 H0503_RS07720 WP_084829069.1 1486126..1486869(-) (amiE) [Streptococcus thermophilus isolate STH_CIRM_19]
ATGATTAGTATCAAAAATTTGACCAAGGAATTTTCAGGACAAAAGGTTCTCGATGGCATCGATATTGACATTGAAAAAGG
TGAAGTTGTGGCTCTTGTTGGTGCCTCTGGTGCAGGGAAGTCGACTATCCTTCGTTGCTTGAACTATTTGGAACAACCTG
ATTCTGGTACTATTGCCATTGATGATTTCAAGGTGGATTTTGGAACAATTACCAAGGAGCAAATCCTTACCCTTCGTCGT
AAGTTGGCCATGGTGTTCCAACAGTTCAACCTCTTTGAACGTCGTACAGCCTTGGATAATGTTAAGGAAGGTCTCAAGAT
TGTTAAGAAACTTTCTGACGACGAAGCTACCAAGATTGCTAAAGAAGAGCTCGCTAAGGTTGGGCTTTCTAATCGTGAAA
ATTACTACCCACGTCACTTGTCGGGTGGTCAAAAGCAACGTGTGGCTTTGGCTCGTGCCCTTGCAATGAGGCCTGATGTG
CTCTTGCTTGACGAACCAACATCTGCCCTTGACCCTGAGTTGGTTGGTGAGGTTGAAAAATCAATCGTAGATGCGGCTAA
ATCAGGTCAAACCATGATTTTGGTCAGTCACGACATGAACTTTATTTATCAAGTGGCTGACAAGGTGCTTTTCCTTGAAA
AAGGTCATATCCTTGAACAAGGAACACCTGATGAAATCTTTAACCATCCAAAAGAAGAGCGAACAAAAGAATTCTTCGCT
TCTTATTCAAAACAATATCTTTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(17-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

33.962

100

0.364