Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   ABHM94_RS06970 Genome accession   NZ_CP157939
Coordinates   1305739..1306254 (-) Length   171 a.a.
NCBI ID   WP_002907516.1    Uniprot ID   -
Organism   Campylobacter jejuni strain P8     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1300739..1311254
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABHM94_RS06955 (ABHM94_06955) - 1300840..1302567 (-) 1728 WP_052804962.1 flagellin A -
  ABHM94_RS06960 (ABHM94_06960) - 1302650..1304476 (-) 1827 WP_002856576.1 motility associated factor glycosyltransferase family protein -
  ABHM94_RS06965 (ABHM94_06965) - 1304488..1305739 (-) 1252 Protein_1313 DUF2920 family protein -
  ABHM94_RS06970 (ABHM94_06970) ctsG 1305739..1306254 (-) 516 WP_002907516.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  ABHM94_RS06975 (ABHM94_06975) tsaD 1306255..1307262 (-) 1008 WP_002867317.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  ABHM94_RS06980 (ABHM94_06980) - 1307259..1308653 (-) 1395 WP_002856050.1 M99 family carboxypeptidase catalytic domain-containing protein -
  ABHM94_RS06985 (ABHM94_06985) dxr 1308655..1309725 (-) 1071 WP_002855670.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  ABHM94_RS06990 (ABHM94_06990) cdsA 1309722..1310447 (-) 726 WP_002856027.1 phosphatidate cytidylyltransferase -
  ABHM94_RS06995 (ABHM94_06995) - 1310456..1310794 (-) 339 WP_002855905.1 hypothetical protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18678.52 Da        Isoelectric Point: 6.4693

>NTDB_id=1009049 ABHM94_RS06970 WP_002907516.1 1305739..1306254(-) (ctsG) [Campylobacter jejuni strain P8]
MRKAFTILELVFVIVILGILAAIALPKMSSSKDEAEVSKSLNNIKTLINDISIYTLKNDHLSSIKTMSNVSGVENVDLGN
FNGTKEVNFRVGDEKECLKLVFINKADFILMGISSNEASKNAIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNL
ASKTYLLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=1009049 ABHM94_RS06970 WP_002907516.1 1305739..1306254(-) (ctsG) [Campylobacter jejuni strain P8]
ATGAGAAAAGCTTTTACTATATTAGAACTTGTTTTTGTGATTGTTATTTTAGGAATTTTAGCCGCTATTGCTTTACCAAA
AATGAGTTCAAGCAAGGATGAAGCTGAAGTTAGCAAGTCTTTAAACAACATTAAAACTTTGATCAACGATATAAGCATTT
ATACTTTAAAAAATGATCATTTAAGCTCTATAAAAACGATGAGTAATGTAAGTGGGGTTGAAAATGTTGATCTTGGCAAT
TTTAATGGCACAAAAGAAGTAAATTTTCGCGTAGGCGATGAGAAAGAATGCTTAAAACTTGTTTTTATAAATAAAGCTGA
TTTTATACTCATGGGAATTTCAAGCAATGAAGCAAGTAAAAATGCTATCATCAACGCAGCCAATCAAAGCCATGAAGATT
TAGAAAATATAGACTTTACAAGCTCTTCTAGTAATAAAGCTTGTGTGATTTTAAGTAAGAATGAAAATTTTAAAAACCTA
GCGAGTAAAACTTATCTTTTAATAGGGGGAATGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

93.567

100

0.936

Multiple sequence alignment