Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   ABNF96_RS07175 Genome accession   NZ_CP157937
Coordinates   1435301..1437658 (+) Length   785 a.a.
NCBI ID   WP_035204527.1    Uniprot ID   -
Organism   Shouchella clausii strain TIL-28S     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1430301..1442658
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABNF96_RS07145 - 1430374..1430613 (+) 240 WP_035204523.1 hypothetical protein -
  ABNF96_RS07150 spoVB 1430650..1432200 (-) 1551 WP_035204525.1 stage V sporulation protein B -
  ABNF96_RS07155 - 1432369..1432659 (+) 291 WP_011246408.1 post-transcriptional regulator -
  ABNF96_RS07160 secD 1432694..1433995 (+) 1302 WP_011246409.1 protein translocase subunit SecD -
  ABNF96_RS07165 secF 1433985..1434920 (+) 936 WP_073303973.1 protein translocase subunit SecF -
  ABNF96_RS07170 - 1434936..1435238 (+) 303 WP_011246411.1 LapA family protein -
  ABNF96_RS07175 recJ 1435301..1437658 (+) 2358 WP_035204527.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  ABNF96_RS07180 - 1437648..1438163 (+) 516 WP_011246413.1 adenine phosphoribosyltransferase -
  ABNF96_RS07185 - 1438295..1440484 (+) 2190 WP_081427594.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  ABNF96_RS07190 dtd 1440506..1440946 (+) 441 WP_011246415.1 D-aminoacyl-tRNA deacylase -
  ABNF96_RS07195 - 1441249..1441647 (+) 399 WP_350011937.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 785 a.a.        Molecular weight: 87796.53 Da        Isoelectric Point: 5.0678

>NTDB_id=1009000 ABNF96_RS07175 WP_035204527.1 1435301..1437658(+) (recJ) [Shouchella clausii strain TIL-28S]
MLQSKTRWRILEQNELLAQELADELRVSMLTARLLVRRGIQTVQAAKRFLHYEEPTFYDPFLLKGMEETIERIALAVKRK
ERILVFGDYDADGVSSTSVMLTALQTYGADCDYYIPNRFTEGYGPNCPALDFAKRQGYHLVITVDTGISALNEAAHAKDI
GLDFIITDHHEPPPVLPEALAIINPKQPGCPYPFKELAGVGVAFKVAHALLGRLPEELLDYAVIGTIADLVPLIDENRLL
AKKGLRAIESSGRPGIRALKEVCGMKQEAMDADHIGFAIGPRLNAAGRLDSANPAVELLLADDEEEAKALATEIDSLNKE
RQAIVSKMTEEAIRLVETTYGTKIPHAIVVAKEGWNPGVIGIVASRLVEQFYRPTIVMSIDESSGLAKGSARSIEGFDMY
QELANNRDILPHFGGHPMAAGMTLKTEDIDDLRSRLIKQAKETLTDDMLTPATDIDLVAEVEDVTVQVIGELQALAPFGV
ANRKPIVLVEGAHISDMRRIGSNQNHLKIQFTGAQKPLDGIAFRMGHLFEEITPHAKLSAIGTVSLNEWNGKVKPQLIID
DLAVLEWQLFDWRSIQPNRLNSRLLDLPREKLVAISFQEGTKERLGLDVPVYDYRQAPSFFKAYVVLLDLPSNRVELETL
FSKKGEPSRVYVVFSEEEESFFQTNPNREQFKWYYGFIKKNQRFSLNQLGAKLEKHKGWSARTVEFMTTVFLELGFIKLD
DGIVEAVENPEKKALTASPTYQAKQEKAWLENEFVFASYQQLKEWFQAAIDGSAETKEESILNGL

Nucleotide


Download         Length: 2358 bp        

>NTDB_id=1009000 ABNF96_RS07175 WP_035204527.1 1435301..1437658(+) (recJ) [Shouchella clausii strain TIL-28S]
ATGTTGCAATCAAAAACAAGATGGCGCATTTTAGAACAAAACGAGCTGTTGGCGCAAGAGCTCGCAGACGAGCTGCGTGT
ATCGATGTTAACGGCCCGTCTTCTTGTACGCCGGGGAATCCAAACCGTCCAGGCGGCCAAGCGCTTTTTACACTACGAAG
AGCCGACGTTTTACGATCCCTTTTTGTTGAAAGGGATGGAGGAAACGATTGAACGAATTGCCCTCGCAGTCAAACGAAAA
GAACGCATTCTTGTTTTTGGGGACTATGATGCTGATGGCGTTAGTTCGACTTCCGTGATGCTAACAGCGTTACAAACGTA
TGGCGCCGACTGTGATTACTATATACCAAACCGTTTTACAGAAGGATACGGGCCCAATTGCCCAGCGCTAGACTTTGCAA
AAAGGCAAGGTTATCACTTAGTGATAACAGTCGATACAGGCATTTCTGCTTTGAATGAAGCTGCCCATGCCAAAGACATC
GGCCTGGATTTTATTATCACTGACCACCATGAGCCGCCGCCGGTTTTGCCAGAAGCATTGGCGATCATTAATCCTAAGCA
GCCTGGTTGTCCGTATCCATTTAAAGAGCTTGCTGGCGTAGGCGTTGCCTTTAAAGTTGCACACGCTTTGCTCGGGCGCC
TGCCTGAAGAGCTGCTCGATTACGCTGTGATCGGCACGATCGCCGACTTGGTGCCTCTCATTGATGAAAATCGGCTGCTG
GCCAAAAAGGGGCTTCGCGCGATTGAATCAAGCGGCCGCCCTGGGATCCGTGCCTTAAAGGAAGTATGCGGCATGAAGCA
GGAAGCAATGGATGCCGACCATATCGGCTTTGCGATTGGCCCTCGTCTAAATGCAGCAGGGCGGCTCGATTCTGCTAATC
CAGCCGTTGAGCTGCTCCTTGCTGATGATGAAGAAGAAGCAAAAGCGCTAGCCACAGAAATCGATAGCCTCAATAAAGAA
CGGCAAGCAATTGTTAGCAAAATGACAGAAGAAGCGATTCGCCTTGTGGAAACAACCTATGGCACAAAGATCCCCCATGC
CATCGTTGTAGCGAAGGAAGGCTGGAATCCAGGGGTCATCGGGATTGTCGCTTCTCGCCTTGTAGAGCAGTTTTACCGTC
CGACAATTGTCATGAGCATTGACGAATCTTCAGGACTTGCGAAAGGCTCGGCCAGAAGCATCGAAGGGTTTGACATGTAC
CAAGAATTGGCGAATAACCGGGATATACTTCCTCATTTTGGCGGACACCCGATGGCGGCAGGGATGACACTTAAAACCGA
GGACATTGACGACTTACGTTCTCGTTTAATCAAGCAAGCCAAGGAGACACTAACGGACGACATGCTTACGCCAGCCACGG
ATATAGACCTCGTTGCAGAAGTGGAGGATGTAACCGTTCAAGTGATTGGCGAGTTGCAGGCACTTGCCCCGTTTGGCGTT
GCCAACCGTAAACCGATTGTACTTGTTGAGGGTGCGCATATTTCCGATATGCGCCGGATTGGCAGCAACCAAAACCATTT
AAAAATCCAATTTACTGGCGCCCAAAAGCCGCTTGACGGAATTGCCTTTAGAATGGGGCATTTGTTTGAAGAGATCACGC
CACATGCAAAGTTATCTGCCATCGGAACGGTATCGTTGAATGAATGGAACGGAAAAGTAAAGCCACAACTTATTATTGAC
GATCTTGCCGTATTGGAGTGGCAACTATTTGATTGGCGCAGCATCCAGCCAAACCGTTTAAACAGCCGGTTGCTTGACTT
GCCTCGTGAAAAACTCGTCGCTATTTCCTTTCAAGAAGGGACAAAAGAAAGACTTGGGTTGGACGTACCCGTATATGATT
ACCGGCAAGCGCCTTCCTTTTTTAAAGCTTACGTCGTGTTGCTCGATTTGCCTAGCAACCGGGTTGAACTGGAAACTCTG
TTTTCTAAGAAAGGGGAGCCAAGCCGTGTTTATGTTGTGTTCTCTGAGGAAGAAGAATCGTTTTTTCAAACGAATCCAAA
CCGCGAGCAGTTCAAATGGTATTATGGTTTTATTAAGAAAAACCAACGCTTTTCACTGAATCAACTCGGCGCGAAGCTCG
AAAAGCACAAAGGCTGGTCAGCCCGCACGGTCGAATTTATGACCACTGTATTTTTAGAACTTGGTTTTATCAAGCTTGAC
GACGGCATCGTTGAAGCAGTAGAAAACCCTGAAAAAAAAGCGTTGACTGCATCGCCGACCTACCAAGCCAAGCAGGAAAA
AGCATGGCTTGAGAATGAATTTGTTTTTGCTTCTTATCAACAGTTAAAAGAATGGTTCCAGGCTGCCATCGATGGGAGCG
CTGAAACAAAAGAGGAGTCGATCCTAAATGGATTATAA

Domains

Predicted by InterproScan.

DHHA1 domain (DHHA1)

(315-438)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(568-766)

RecJ OB domain (RecJ_OB)

(455-561)

DHH family (DHH)

(82-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

50.381

100

0.506

Multiple sequence alignment