Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   H0501_RS07860 Genome accession   NZ_LR822008
Coordinates   1525952..1526695 (-) Length   247 a.a.
NCBI ID   WP_084829069.1    Uniprot ID   -
Organism   Streptococcus thermophilus isolate STH_CIRM_18     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1520952..1531695
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0501_RS07830 (STHERMO_1737) - 1521223..1522167 (-) 945 WP_011226463.1 TIGR01212 family radical SAM protein -
  H0501_RS07835 (STHERMO_1738) sepM 1522252..1523328 (-) 1077 WP_011681549.1 SepM family pheromone-processing serine protease Regulator
  H0501_RS07840 (STHERMO_1739) coaD 1523306..1523803 (-) 498 WP_011681550.1 pantetheine-phosphate adenylyltransferase -
  H0501_RS07845 (STHERMO_1740) rsmD 1523837..1524436 (-) 600 Protein_1510 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  H0501_RS07850 (STHERMO_1741) trxB 1524527..1525480 (-) 954 WP_255136104.1 thioredoxin-disulfide reductase -
  H0501_RS07855 (STHERMO_1742) - 1525513..1525737 (-) 225 WP_087010135.1 DUF4059 family protein -
  H0501_RS07860 (STHERMO_1743) amiE 1525952..1526695 (-) 744 WP_084829069.1 amino acid ABC transporter ATP-binding protein Regulator
  H0501_RS07865 (STHERMO_1744) - 1526695..1527441 (-) 747 WP_179970821.1 amino acid ABC transporter permease -
  H0501_RS07870 (STHERMO_1745) - 1527837..1528667 (-) 831 WP_041828322.1 transporter substrate-binding domain-containing protein -
  H0501_RS07875 (STHERMO_1747) - 1529126..1529359 (-) 234 WP_002947030.1 hypothetical protein -
  H0501_RS07880 (STHERMO_1748) dinB 1529657..1530760 (-) 1104 WP_014608654.1 DNA polymerase IV -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 27661.80 Da        Isoelectric Point: 5.7786

>NTDB_id=1008961 H0501_RS07860 WP_084829069.1 1525952..1526695(-) (amiE) [Streptococcus thermophilus isolate STH_CIRM_18]
MISIKNLTKEFSGQKVLDGIDIDIEKGEVVALVGASGAGKSTILRCLNYLEQPDSGTIAIDDFKVDFGTITKEQILTLRR
KLAMVFQQFNLFERRTALDNVKEGLKIVKKLSDDEATKIAKEELAKVGLSNRENYYPRHLSGGQKQRVALARALAMRPDV
LLLDEPTSALDPELVGEVEKSIVDAAKSGQTMILVSHDMNFIYQVADKVLFLEKGHILEQGTPDEIFNHPKEERTKEFFA
SYSKQYL

Nucleotide


Download         Length: 744 bp        

>NTDB_id=1008961 H0501_RS07860 WP_084829069.1 1525952..1526695(-) (amiE) [Streptococcus thermophilus isolate STH_CIRM_18]
ATGATTAGTATCAAAAATTTGACCAAGGAATTTTCAGGACAAAAGGTTCTCGATGGCATCGATATTGACATTGAAAAAGG
TGAAGTTGTGGCTCTTGTTGGTGCCTCTGGTGCAGGGAAGTCGACTATCCTTCGTTGCTTGAACTATTTGGAACAACCTG
ATTCTGGTACTATTGCCATTGATGATTTCAAGGTGGATTTTGGAACAATTACCAAGGAGCAAATCCTTACCCTTCGTCGT
AAGTTGGCCATGGTGTTCCAACAGTTCAACCTCTTTGAACGTCGTACAGCCTTGGATAATGTTAAGGAAGGTCTCAAGAT
TGTTAAGAAACTTTCTGACGACGAAGCTACCAAGATTGCTAAAGAAGAGCTCGCTAAGGTTGGGCTTTCTAATCGTGAAA
ATTACTACCCACGTCACTTGTCGGGTGGTCAAAAGCAACGTGTGGCTTTGGCTCGTGCCCTTGCAATGAGGCCTGATGTG
CTCTTGCTTGACGAACCAACATCTGCCCTTGACCCTGAGTTGGTTGGTGAGGTTGAAAAATCAATCGTAGATGCGGCTAA
ATCAGGTCAAACCATGATTTTGGTCAGTCACGACATGAACTTTATTTATCAAGTGGCTGACAAGGTGCTTTTCCTTGAAA
AAGGTCATATCCTTGAACAAGGAACACCTGATGAAATCTTTAACCATCCAAAAGAAGAGCGAACAAAAGAATTCTTCGCT
TCTTATTCAAAACAATATCTTTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(17-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

33.962

100

0.364