Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   ABNP43_RS07965 Genome accession   NZ_CP157878
Coordinates   1564034..1564813 (+) Length   259 a.a.
NCBI ID   WP_007499612.1    Uniprot ID   A0A9X0FX88
Organism   Bacillus altitudinis strain SCu11     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1559034..1569813
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABNP43_RS07945 (ABNP43_07940) trmFO 1559738..1561042 (+) 1305 WP_007499618.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  ABNP43_RS07950 (ABNP43_07945) xerC 1561105..1562022 (+) 918 WP_349925918.1 tyrosine recombinase XerC -
  ABNP43_RS07955 (ABNP43_07950) hslV 1562037..1562582 (+) 546 WP_007499614.1 ATP-dependent protease subunit HslV -
  ABNP43_RS07960 (ABNP43_07955) hslU 1562599..1563999 (+) 1401 WP_039166692.1 HslU--HslV peptidase ATPase subunit -
  ABNP43_RS07965 (ABNP43_07960) codY 1564034..1564813 (+) 780 WP_007499612.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  ABNP43_RS07970 (ABNP43_07965) flgB 1565102..1565491 (+) 390 WP_017359092.1 flagellar basal body rod protein FlgB -
  ABNP43_RS07975 (ABNP43_07970) flgC 1565491..1565943 (+) 453 WP_007499610.1 flagellar basal body rod protein FlgC -
  ABNP43_RS07980 (ABNP43_07975) fliE 1565955..1566272 (+) 318 WP_007499609.1 flagellar hook-basal body complex protein FliE -
  ABNP43_RS07985 (ABNP43_07980) fliF 1566323..1567915 (+) 1593 WP_349925922.1 flagellar basal-body MS-ring/collar protein FliF -
  ABNP43_RS07990 (ABNP43_07985) fliG 1567927..1568943 (+) 1017 WP_008344808.1 flagellar motor switch protein FliG -
  ABNP43_RS07995 (ABNP43_07990) fliH 1568936..1569700 (+) 765 WP_113747343.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28976.19 Da        Isoelectric Point: 4.6467

>NTDB_id=1008817 ABNP43_RS07965 WP_007499612.1 1564034..1564813(+) (codY) [Bacillus altitudinis strain SCu11]
MALLQKTRIINSMLQDAAGKPVNFKEMAETLRDVIDSNIFVLSRRGKLLGYSINQQIENARMKKMLEDRQFPEEYTKSLF
NVPETSSNLDINSEYTAFPIENRDLFQSGLTTIVPIIGGGDRLGTLILSRLQDTFTDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=1008817 ABNP43_RS07965 WP_007499612.1 1564034..1564813(+) (codY) [Bacillus altitudinis strain SCu11]
ATGGCGTTACTACAAAAAACAAGGATTATTAACTCGATGCTGCAAGATGCAGCGGGGAAACCGGTTAATTTTAAAGAAAT
GGCAGAAACACTGAGAGATGTCATTGATTCAAACATTTTCGTATTAAGCAGAAGAGGAAAGCTTCTTGGCTACTCCATTA
ACCAGCAGATTGAAAATGCACGTATGAAAAAAATGCTGGAAGATCGTCAGTTCCCTGAAGAATATACAAAAAGCTTATTC
AATGTCCCTGAAACATCTTCAAACCTTGACATCAACAGTGAGTACACAGCTTTCCCGATTGAGAACCGTGATTTATTCCA
ATCAGGTTTGACAACGATTGTACCAATCATCGGAGGCGGAGACCGCTTAGGGACGTTAATCCTTTCTCGTTTGCAGGATA
CATTCACAGATGATGATTTAATTCTTGCTGAATACGGCGCAACAGTTGTTGGAATGGAGATTCTTCGCGAGAAAGCGGAA
GAAATTGAAGAAGAAGCAAGAAGTAAAGCGGTTGTTCAAATGGCAATCAGCTCTCTTTCATATAGTGAGCTTGAAGCGAT
TGAGCATATCTTTGAAGAACTTGATGGAAACGAAGGGCTGCTTGTCGCAAGTAAGATTGCTGACCGTGTAGGAATCACTC
GTTCAGTGATCGTAAACGCACTTCGTAAATTAGAAAGTGCAGGCGTTATTGAATCTCGTTCTCTTGGAATGAAGGGAACA
TACATCAAAGTATTAAACAACAAATTTTTAATTGAACTTGAAAATTTAAAATCTCACTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

96.525

100

0.965
  codY Lactococcus lactis subsp. lactis strain DGCC12653

48.031

98.069

0.471

Multiple sequence alignment