Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   ABNP42_RS17825 Genome accession   NZ_CP157868
Coordinates   3437229..3439592 (-) Length   787 a.a.
NCBI ID   WP_094910887.1    Uniprot ID   -
Organism   Priestia flexa strain Antcr29     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3432229..3444592
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABNP42_RS17805 (ABNP42_17775) alaS 3432526..3435159 (-) 2634 WP_094910883.1 alanine--tRNA ligase -
  ABNP42_RS17810 (ABNP42_17780) - 3435559..3436620 (-) 1062 WP_131888321.1 AI-2E family transporter -
  ABNP42_RS17815 (ABNP42_17785) - 3436752..3436886 (-) 135 WP_094910885.1 YrzQ family protein -
  ABNP42_RS17820 (ABNP42_17790) - 3436908..3437099 (-) 192 WP_131888322.1 hypothetical protein -
  ABNP42_RS17825 (ABNP42_17795) recD2 3437229..3439592 (-) 2364 WP_094910887.1 ATP-dependent RecD-like DNA helicase Machinery gene
  ABNP42_RS17830 (ABNP42_17800) - 3439621..3440280 (-) 660 WP_094910888.1 tetratricopeptide repeat protein -
  ABNP42_RS17835 (ABNP42_17805) mnmA 3440392..3441504 (-) 1113 WP_131888323.1 tRNA 2-thiouridine(34) synthase MnmA -
  ABNP42_RS17840 (ABNP42_17810) - 3441533..3442675 (-) 1143 WP_094910889.1 cysteine desulfurase family protein -
  ABNP42_RS17845 (ABNP42_17815) - 3442702..3443118 (-) 417 WP_094910890.1 Rrf2 family transcriptional regulator -
  ABNP42_RS17850 (ABNP42_17820) - 3443315..3444580 (+) 1266 WP_350019628.1 replication-associated recombination protein A -

Sequence

Protein


Download         Length: 787 a.a.        Molecular weight: 88852.65 Da        Isoelectric Point: 5.0768

>NTDB_id=1008587 ABNP42_RS17825 WP_094910887.1 3437229..3439592(-) (recD2) [Priestia flexa strain Antcr29]
MSEEVLNPLQPEEEKTYIKGTAIVTVFHNEENLYNVTRIRIKETNVSMDDKEAIVTGYFPRLNEDELYTFIGNFKEHPKF
GLQFQVEQFKKELPQSKQGVIQYLSSDLFNGIGKKTAENIVEALGERAIYRMLQDPAVLKKVPRLSADKAEKLIAQLREH
QGLEEVMVKLTDLGFGPQLSMKIFQAYKQEALEVIQTNPYQLVEDVQGIGFNRADELGRKLGLATNHPNRLRAGILYVIE
HECNQMGHVYVKAEQLYQKTGELLQKSRQEPLSEMDITREIDALKEEKKIIIDDDKMYFPPLFYAEKGVVKAISKLMAQT
EYAEQFPESEFLLALGELEERLGVQYAPSQREGIQKALLSPMLLLTGGPGTGKTTVIKGIVELYAELHGCSLNPGDYKKD
EGFPVLLVAPTGRAAKRMSEATGLPAVTIHRLLKWNGQEGFDHNEENPINGKLLIVDEVSMVDLWLAHQLFKSLPASIQV
VLVGDEDQLPSVGPGQVLKDLLHSEAVPTVRLTDVYRQEEGSSIIDLAHEIKKGRLPSDLTNQQGDRSFIRCYGGQITDV
VKQVCGNAVKKGYTAKDIQVLAPMYKGPAGIDKMNEVLQELFNPASHQRRELKHGDVTYRVGDKVLQLVNQPDSNVFNGD
MGEIVSVFFAKENTEKQDMLVISFEGNEVTYTKQDFNQITHAYCCSIHKSQGSEFPIVVLPIVKSYYRMLRRNLLYTAVT
RSKQFLILCGEEEAFQIGVNRNEDSVRQTNLQALLKEQLVDELEDPEVPFMKDANIGMENLTPYDFM

Nucleotide


Download         Length: 2364 bp        

>NTDB_id=1008587 ABNP42_RS17825 WP_094910887.1 3437229..3439592(-) (recD2) [Priestia flexa strain Antcr29]
ATGAGTGAGGAAGTTCTAAACCCTTTACAACCCGAGGAAGAGAAAACGTACATAAAAGGCACGGCAATTGTCACGGTCTT
TCATAACGAAGAAAACTTGTATAACGTAACAAGAATTAGAATAAAAGAAACAAATGTATCTATGGACGATAAAGAAGCGA
TTGTTACGGGTTATTTCCCTCGTTTAAATGAAGATGAGCTTTACACTTTTATTGGAAATTTTAAAGAACATCCGAAATTT
GGCCTTCAGTTTCAAGTAGAGCAGTTTAAAAAAGAGCTTCCCCAGTCAAAGCAAGGGGTTATTCAGTACTTATCAAGTGA
TCTCTTTAATGGTATTGGTAAAAAAACGGCAGAAAATATTGTAGAAGCACTGGGTGAGCGTGCAATTTACCGAATGCTAC
AAGACCCTGCAGTATTAAAAAAGGTGCCTAGACTTTCTGCTGATAAAGCTGAAAAGCTAATTGCTCAGCTAAGAGAGCAT
CAGGGGTTAGAAGAAGTAATGGTTAAGCTGACAGATTTGGGTTTTGGTCCGCAGCTTTCTATGAAAATTTTCCAAGCTTA
TAAACAAGAAGCTCTAGAAGTGATTCAAACAAATCCCTATCAGCTCGTAGAAGATGTGCAAGGAATTGGCTTTAATCGAG
CGGATGAATTAGGGAGAAAGCTCGGGTTAGCAACCAATCACCCTAATCGGCTTCGAGCCGGGATTTTATATGTTATTGAA
CATGAATGCAATCAAATGGGACACGTCTATGTGAAAGCAGAGCAGCTATATCAGAAAACGGGAGAACTGTTACAAAAGAG
TCGTCAAGAACCACTCTCAGAAATGGATATTACACGCGAGATTGACGCATTAAAAGAAGAGAAAAAGATTATTATTGATG
ACGATAAAATGTACTTTCCACCGCTTTTTTATGCTGAAAAAGGAGTCGTTAAAGCAATTAGCAAGCTCATGGCCCAAACA
GAGTACGCAGAGCAATTTCCCGAATCAGAGTTCCTTCTAGCTCTAGGGGAGTTAGAAGAACGTTTAGGCGTACAATATGC
ACCTTCGCAAAGGGAAGGGATTCAAAAAGCACTTTTATCCCCAATGCTTCTTCTTACAGGAGGCCCAGGGACGGGTAAAA
CAACAGTAATTAAAGGTATTGTAGAACTTTATGCAGAGCTTCATGGCTGTTCGTTAAATCCAGGCGATTATAAAAAAGAC
GAAGGGTTTCCCGTATTGCTTGTCGCTCCTACTGGACGAGCGGCTAAGCGTATGAGTGAGGCAACGGGCTTACCAGCGGT
GACGATTCACAGGCTTCTAAAGTGGAATGGACAAGAAGGGTTTGACCACAATGAAGAGAATCCAATCAATGGCAAGTTGT
TGATTGTGGATGAGGTCTCCATGGTGGATCTATGGCTTGCTCACCAACTCTTTAAATCACTTCCAGCTAGCATCCAAGTA
GTGCTTGTAGGAGATGAGGACCAATTGCCTTCAGTTGGTCCTGGCCAGGTACTGAAAGACTTATTACATTCTGAAGCCGT
TCCTACCGTACGATTAACAGACGTGTATCGCCAAGAAGAAGGCTCATCTATCATTGATTTGGCTCATGAAATTAAAAAAG
GACGTCTTCCATCCGATTTAACTAATCAACAAGGTGATCGTTCTTTTATTCGCTGTTACGGTGGGCAAATTACAGATGTC
GTCAAACAAGTGTGTGGCAATGCTGTAAAAAAAGGCTATACGGCTAAAGATATTCAGGTATTAGCTCCAATGTATAAAGG
TCCAGCTGGTATTGATAAGATGAATGAAGTCCTTCAAGAGTTATTTAATCCGGCTTCTCATCAACGGAGAGAACTGAAGC
ATGGAGATGTAACCTATCGTGTAGGCGATAAGGTGCTTCAGCTTGTCAATCAACCGGATAGCAATGTTTTTAATGGGGAT
ATGGGGGAGATTGTATCTGTTTTTTTCGCCAAAGAAAATACAGAGAAGCAGGATATGCTCGTTATTTCATTCGAAGGAAA
TGAAGTAACGTATACGAAACAAGACTTTAATCAGATTACGCATGCGTACTGCTGTTCTATTCATAAATCACAAGGAAGTG
AGTTCCCCATTGTTGTGTTGCCTATTGTGAAAAGCTATTATCGAATGCTGAGACGAAACCTTCTCTATACAGCAGTCACC
AGAAGCAAGCAGTTCTTAATCTTATGTGGCGAAGAAGAAGCGTTTCAAATTGGCGTAAATCGGAACGAAGATAGCGTTCG
GCAAACCAATCTACAAGCTCTTCTCAAAGAGCAATTAGTTGATGAGTTAGAAGATCCTGAGGTTCCATTTATGAAAGATG
CAAATATTGGTATGGAAAACCTTACGCCGTATGATTTTATGTAA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(681-729)

Helix-hairpin-helix containing domain (HHH_RecD2)

(159-250)

AAA domain (AAA_30)

(346-552)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(594-664)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

65.006

99.492

0.647

Multiple sequence alignment