Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   H1C74_RS03665 Genome accession   NZ_LR778148
Coordinates   730618..731085 (+) Length   155 a.a.
NCBI ID   WP_000339836.1    Uniprot ID   -
Organism   Escherichia coli isolate SC475     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 725618..736085
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1C74_RS03620 rplP 725728..726138 (-) 411 WP_000941212.1 50S ribosomal protein L16 -
  H1C74_RS03625 rpsC 726151..726852 (-) 702 WP_000529945.1 30S ribosomal protein S3 -
  H1C74_RS03630 rplV 726870..727202 (-) 333 WP_000447529.1 50S ribosomal protein L22 -
  H1C74_RS03635 rpsS 727217..727495 (-) 279 WP_001138117.1 30S ribosomal protein S19 -
  H1C74_RS03640 rplB 727512..728333 (-) 822 WP_000301864.1 50S ribosomal protein L2 -
  H1C74_RS03645 rplW 728351..728653 (-) 303 WP_000617544.1 50S ribosomal protein L23 -
  H1C74_RS03650 rplD 728650..729255 (-) 606 WP_000424395.1 50S ribosomal protein L4 -
  H1C74_RS03655 rplC 729266..729895 (-) 630 WP_000579833.1 50S ribosomal protein L3 -
  H1C74_RS03660 rpsJ 729928..730239 (-) 312 WP_001181004.1 30S ribosomal protein S10 -
  H1C74_RS03665 pilD 730618..731085 (+) 468 WP_000339836.1 A24 family peptidase Machinery gene
  H1C74_RS03670 bfr 731082..731558 (-) 477 WP_000675515.1 bacterioferritin -
  H1C74_RS03675 bfd 731631..731825 (-) 195 WP_000289090.1 bacterioferritin-associated ferredoxin -
  H1C74_RS03680 tuf 732008..733192 (-) 1185 WP_000031783.1 elongation factor Tu -
  H1C74_RS03685 fusA 733263..735377 (-) 2115 WP_000124700.1 elongation factor G -
  H1C74_RS03690 rpsG 735474..735944 (-) 471 WP_001138043.1 30S ribosomal protein S7 -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 16951.08 Da        Isoelectric Point: 8.1296

>NTDB_id=1008256 H1C74_RS03665 WP_000339836.1 730618..731085(+) (pilD) [Escherichia coli isolate SC475]
MDANLPFLILYACLSVLLFLWDAKHGLLPDRFTCPLLWSGLLFSQVCNPDGLADALWGAIIGYGTFAVIYWGYRILRHKE
GLGYGDVKFLAALGAWHTWTFLPRLVFLAASFACGAVVVGLLMRGKESLKNPLPFGPFLAAAGFVVGWDSLLAGR

Nucleotide


Download         Length: 468 bp        

>NTDB_id=1008256 H1C74_RS03665 WP_000339836.1 730618..731085(+) (pilD) [Escherichia coli isolate SC475]
ATGGACGCTAACCTTCCCTTTCTGATTTTGTACGCTTGTTTATCTGTCCTACTTTTTTTATGGGATGCAAAGCATGGCTT
GTTACCTGACAGATTTACCTGCCCGTTACTCTGGTCAGGTCTTTTGTTCTCTCAGGTTTGTAATCCTGACGGTTTAGCCG
ATGCGTTATGGGGGGCGATTATTGGTTACGGCACATTCGCTGTCATTTACTGGGGGTATCGCATACTGCGTCATAAAGAA
GGATTAGGCTATGGTGATGTGAAGTTTCTCGCCGCCCTTGGTGCCTGGCATACCTGGACCTTCTTGCCACGACTGGTTTT
CCTTGCTGCCTCATTCGCTTGCGGAGCCGTAGTTGTTGGTCTGCTCATGAGAGGAAAAGAGTCATTAAAAAACCCGCTGC
CGTTTGGGCCATTTCTGGCGGCTGCGGGTTTCGTTGTAGGTTGGGATAGTTTGCTAGCAGGCCGTTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(10-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

44.8

80.645

0.361

Multiple sequence alignment