Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   ABL163_RS08165 Genome accession   NZ_CP157671
Coordinates   1614938..1615717 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis strain TZ01     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1609938..1620717
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABL163_RS08145 trmFO 1610625..1611932 (+) 1308 WP_012117550.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  ABL163_RS08150 xerC 1612002..1612919 (+) 918 WP_007409774.1 tyrosine recombinase XerC -
  ABL163_RS08155 hslV 1612935..1613480 (+) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  ABL163_RS08160 hslU 1613497..1614900 (+) 1404 WP_007611413.1 HslU--HslV peptidase ATPase subunit -
  ABL163_RS08165 codY 1614938..1615717 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  ABL163_RS08170 flgB 1616071..1616460 (+) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  ABL163_RS08175 flgC 1616460..1616912 (+) 453 WP_007409776.1 flagellar basal body rod protein FlgC -
  ABL163_RS08180 fliE 1616923..1617243 (+) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  ABL163_RS08185 fliF 1617286..1618896 (+) 1611 WP_032874889.1 flagellar basal-body MS-ring/collar protein FliF -
  ABL163_RS08190 fliG 1618909..1619925 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  ABL163_RS08195 fliH 1619918..1620673 (+) 756 WP_032874891.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=1007975 ABL163_RS08165 WP_003154263.1 1614938..1615717(+) (codY) [Bacillus velezensis strain TZ01]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=1007975 ABL163_RS08165 WP_003154263.1 1614938..1615717(+) (codY) [Bacillus velezensis strain TZ01]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTAGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471

Multiple sequence alignment