Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   H1C98_RS06865 Genome accession   NZ_LR778143
Coordinates   1443560..1444552 (-) Length   330 a.a.
NCBI ID   WP_180344584.1    Uniprot ID   -
Organism   Escherichia coli isolate SC422     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1438560..1449552
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1C98_RS06855 yieP 1441452..1442144 (+) 693 WP_001131169.1 FadR/GntR family transcriptional regulator -
  H1C98_RS06860 mdtD 1442167..1443594 (+) 1428 WP_001280864.1 multidrug transporter subunit MdtD -
  H1C98_RS06865 cytR 1443560..1444552 (-) 993 WP_180344584.1 ribose operon transcriptional repressor RbsR Regulator
  H1C98_RS06870 rbsK 1444556..1445485 (-) 930 WP_001300603.1 ribokinase -
  H1C98_RS06875 rbsB 1445611..1446501 (-) 891 WP_001056273.1 ribose ABC transporter substrate-binding protein RbsB -
  H1C98_RS06880 rbsC 1446526..1447491 (-) 966 WP_000211858.1 ribose ABC transporter permease -
  H1C98_RS06885 rbsA 1447496..1449001 (-) 1506 WP_000387753.1 ribose ABC transporter ATP-binding protein RbsA -
  H1C98_RS06890 rbsD 1449009..1449428 (-) 420 WP_000715936.1 D-ribose pyranase -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 36540.83 Da        Isoelectric Point: 5.4086

>NTDB_id=1007947 H1C98_RS06865 WP_180344584.1 1443560..1444552(-) (cytR) [Escherichia coli isolate SC422]
MATMKDVARLAGVSTSTVSHVINKDRFVSEAISAKVEAAIKELNYAPSALARSLKLNQTHTIGMLITASTNPFYSELVRG
VERSCFERGYSLVLCNTEGDEQRMNRNLETLMQKRVDGLLLLCTETHQPSREIMQRYPTVPTVMMDRAPFDGDSDLIQDN
SLLGGDLATQYLIDKGHTRIACITGPLDKTPARLRLEGYRAAMKRAGLSIPDGYEVTGDFEFNGGFDAMRQLLSHPLRPQ
AVFTGNDAMAVGVYQALYQAELQVPQDIAVIGYDDIELASFMTPPLTTIHQPKDELGELAIDVLIHRITQPTLQQQRLQL
TPILMERGSA

Nucleotide


Download         Length: 993 bp        

>NTDB_id=1007947 H1C98_RS06865 WP_180344584.1 1443560..1444552(-) (cytR) [Escherichia coli isolate SC422]
TTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTT
CGTCAGTGAAGCGATTTCCGCCAAAGTTGAAGCGGCGATTAAAGAACTCAATTACGCGCCATCAGCCCTGGCGCGTAGCC
TCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACCAATCCTTTCTATTCAGAACTGGTGCGTGGC
GTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTCGTCCTTTGCAATACCGAAGGCGATGAACAGCGGATGAATCGCAA
TCTGGAAACGCTGATGCAAAAACGCGTTGATGGCTTGCTGTTACTGTGCACCGAAACGCATCAACCTTCGCGTGAAATCA
TGCAACGTTATCCGACAGTGCCTACTGTGATGATGGACAGGGCTCCGTTCGATGGCGACAGCGATCTTATTCAGGATAAC
TCGTTGCTGGGCGGAGACTTAGCAACGCAATATCTGATCGATAAAGGTCATACCCGTATCGCCTGTATTACCGGTCCGCT
GGATAAAACTCCGGCGCGCCTGCGGTTGGAAGGTTATCGGGCGGCGATGAAACGTGCGGGTCTCAGCATTCCTGATGGCT
ATGAAGTCACTGGTGATTTTGAATTTAACGGCGGGTTTGACGCCATGCGCCAACTGTTATCACATCCGCTGCGTCCTCAG
GCCGTCTTTACCGGAAATGACGCTATGGCTGTTGGCGTTTACCAGGCGTTATATCAGGCAGAGTTACAGGTTCCGCAGGA
TATCGCGGTGATTGGCTATGACGATATCGAACTGGCAAGCTTTATGACGCCACCATTAACCACTATCCACCAACCGAAAG
ATGAACTGGGGGAGCTGGCGATTGATGTACTCATCCATCGGATAACCCAGCCGACCCTTCAGCAACAACGATTACAACTT
ACTCCGATTCTGATGGAACGCGGTTCGGCTTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(3-48)

Periplasmic binding protein-like domain (Peripla_BP_3)

(169-329)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

36.858

100

0.37