Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   ABLU27_RS04765 Genome accession   NZ_CP157500
Coordinates   850663..851451 (+) Length   262 a.a.
NCBI ID   WP_003129722.1    Uniprot ID   -
Organism   Lactococcus lactis strain 2B-9     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 845663..856451
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABLU27_RS04740 (ABLU27_04745) - 846031..846822 (+) 792 WP_010905159.1 DNA/RNA non-specific endonuclease -
  ABLU27_RS04745 (ABLU27_04750) - 846987..847196 (+) 210 WP_010905160.1 hypothetical protein -
  ABLU27_RS04750 (ABLU27_04755) - 847208..847447 (+) 240 WP_003129719.1 hypothetical protein -
  ABLU27_RS04755 (ABLU27_04760) - 847644..849227 (+) 1584 WP_033899174.1 APC family permease -
  ABLU27_RS04760 (ABLU27_04765) - 849296..850510 (+) 1215 WP_003129721.1 pyridoxal phosphate-dependent aminotransferase -
  ABLU27_RS04765 (ABLU27_04770) codY 850663..851451 (+) 789 WP_003129722.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  ABLU27_RS04770 (ABLU27_04775) gatC 851960..852265 (+) 306 WP_010905163.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -
  ABLU27_RS04775 (ABLU27_04780) gatA 852265..853725 (+) 1461 Protein_817 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA -
  ABLU27_RS04780 (ABLU27_04785) - 853729..854331 (+) 603 WP_058217152.1 NUDIX hydrolase N-terminal domain-containing protein -
  ABLU27_RS04785 (ABLU27_04790) gatB 854371..855804 (+) 1434 WP_003129725.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -

Sequence

Protein


Download         Length: 262 a.a.        Molecular weight: 29128.46 Da        Isoelectric Point: 4.5254

>NTDB_id=1007286 ABLU27_RS04765 WP_003129722.1 850663..851451(+) (codY) [Lactococcus lactis strain 2B-9]
MATLLEKTRKITAILQDGVTDLQQELPYNSMTERLANVIDCNACVINTKGELLGYSLPYNTNNDRVDQFFYDRKLPDEYV
RAAVRIYDTMANVPVDRPLAIFPEESLGDFPKGVTTLAPIYGSGMRLGTFIMWREDGEFTDDDLVLVELATTVIGVQLSN
LKLEQMEENIRKDTMATMAVNTLSYSEMKAVKAIIEELDGEEGHVIASVIADKIGITRSVIVNALRKLESAGVIESRSLG
MKGTYLKVLNTGLFDKLAGRNF

Nucleotide


Download         Length: 789 bp        

>NTDB_id=1007286 ABLU27_RS04765 WP_003129722.1 850663..851451(+) (codY) [Lactococcus lactis strain 2B-9]
GTGGCTACATTACTTGAAAAAACACGTAAAATCACCGCGATTTTGCAAGATGGAGTGACCGATTTGCAACAAGAGTTGCC
ATATAACAGTATGACTGAACGCTTGGCAAACGTCATTGATTGCAATGCATGTGTGATTAATACGAAGGGCGAGTTGCTTG
GTTACTCATTGCCTTATAATACAAACAATGACCGTGTTGACCAATTTTTCTATGATCGTAAATTGCCTGATGAATATGTT
CGTGCGGCAGTACGTATCTACGATACAATGGCAAACGTTCCTGTTGACCGTCCATTAGCAATCTTCCCAGAAGAAAGCCT
TGGCGATTTTCCAAAAGGTGTGACAACTTTAGCACCTATTTATGGTTCTGGAATGCGTTTGGGAACATTTATCATGTGGC
GTGAAGACGGCGAATTCACTGATGATGATTTGGTCTTAGTTGAACTTGCAACAACAGTAATTGGTGTTCAACTCTCAAAT
CTTAAACTTGAACAAATGGAAGAAAATATCCGTAAAGACACCATGGCAACTATGGCTGTTAACACACTTTCATATTCAGA
AATGAAAGCTGTTAAAGCAATCATTGAAGAGCTTGATGGTGAAGAAGGGCATGTTATCGCTTCTGTCATTGCTGACAAGA
TTGGGATTACACGTTCAGTCATCGTTAACGCTTTGCGTAAACTCGAATCTGCTGGTGTAATTGAATCACGTTCACTTGGT
ATGAAAGGAACTTATCTTAAAGTTCTTAATACTGGTTTATTTGATAAACTTGCAGGACGTAATTTCTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(201-258)

CodY GAF-like domain (CodY)

(3-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

100

100

1
  codY Bacillus subtilis subsp. subtilis str. 168

47.638

96.947

0.462

Multiple sequence alignment