Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   ABLU29_RS04555 Genome accession   NZ_CP157498
Coordinates   803271..804209 (+) Length   312 a.a.
NCBI ID   WP_012898520.1    Uniprot ID   A0A2A9ILQ4
Organism   Lactococcus lactis strain 2B-5     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 798271..809209
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABLU29_RS04530 (ABLU29_04520) - 798601..799227 (+) 627 WP_004254567.1 ABC transporter ATP-binding protein -
  ABLU29_RS04535 (ABLU29_04525) - 799565..800338 (+) 774 WP_023164598.1 hypothetical protein -
  ABLU29_RS04540 (ABLU29_04530) - 800353..800811 (+) 459 WP_010906266.1 hypothetical protein -
  ABLU29_RS04545 (ABLU29_04535) typA 800999..802831 (+) 1833 WP_021723473.1 translational GTPase TypA -
  ABLU29_RS04550 (ABLU29_04540) - 802932..803183 (+) 252 WP_004254583.1 DUF3165 family protein -
  ABLU29_RS04555 (ABLU29_04545) comYH 803271..804209 (+) 939 WP_012898520.1 class I SAM-dependent methyltransferase Machinery gene
  ABLU29_RS04560 (ABLU29_04550) - 804404..805591 (+) 1188 WP_406834778.1 acetate kinase -
  ABLU29_RS04565 (ABLU29_04555) - 805748..806935 (+) 1188 WP_015427114.1 acetate kinase -
  ABLU29_RS04570 (ABLU29_04560) - 807069..807521 (+) 453 WP_010906263.1 hypothetical protein -
  ABLU29_RS04575 (ABLU29_04565) pyrH 807606..808322 (+) 717 WP_004254608.1 UMP kinase -
  ABLU29_RS04580 (ABLU29_04570) frr 808534..809091 (+) 558 WP_004254618.1 ribosome recycling factor -

Sequence

Protein


Download         Length: 312 a.a.        Molecular weight: 34798.94 Da        Isoelectric Point: 4.3717

>NTDB_id=1007236 ABLU29_RS04555 WP_012898520.1 803271..804209(+) (comYH) [Lactococcus lactis strain 2B-5]
MDMEKVAQGFELVVANIMLLSEKLDTDFYDAFVEQNAAFLDDTDQGIVELSVNNDKLRQLNLSNKEWQKLFQFVLLKGSQ
VAPLQPNHAMTPDAIGLIFNFIIEHLNKNSELRLIEFGSGMGNLAETLLVNLNKKVDYVGFEVDDLLLDLSASMAEIMGS
QAEFMQIDAVQKRLMEPADVVVSDLPIGFYPDDEVAKNFEVATTDGHTFAHHLLIEQSFNYLKEGSFAIFLAPEDLLTSP
QGPLLKEWISKHGSVMAVITLPKSLFNADAKAIYVLKKGPAAHATFAHPLSSLTDRESLEVFMEEFTKIVKL

Nucleotide


Download         Length: 939 bp        

>NTDB_id=1007236 ABLU29_RS04555 WP_012898520.1 803271..804209(+) (comYH) [Lactococcus lactis strain 2B-5]
ATGGATATGGAAAAAGTGGCTCAAGGTTTTGAGCTAGTTGTTGCAAATATTATGTTACTATCTGAGAAATTGGATACAGA
TTTTTATGATGCTTTTGTAGAACAAAATGCTGCTTTTTTAGATGATACTGACCAAGGAATTGTTGAATTGTCAGTAAATA
ATGACAAACTTCGTCAGTTAAATTTATCAAATAAGGAGTGGCAAAAACTTTTTCAATTTGTTTTGTTGAAAGGGTCACAA
GTCGCACCACTTCAGCCCAATCATGCAATGACTCCAGATGCAATTGGTTTAATTTTTAATTTCATTATTGAACATCTTAA
TAAAAATTCTGAACTTCGTTTAATTGAATTTGGGTCTGGCATGGGTAATCTTGCTGAAACGCTTTTAGTTAATCTTAATA
AAAAGGTTGATTATGTAGGCTTTGAAGTTGATGATTTACTTTTAGATTTGTCTGCTTCAATGGCTGAAATTATGGGGAGT
CAGGCTGAGTTCATGCAAATTGATGCAGTACAAAAGCGTTTGATGGAACCTGCAGACGTTGTTGTCAGTGATTTACCAAT
TGGTTTTTATCCGGATGATGAAGTTGCAAAGAATTTTGAAGTTGCGACTACTGACGGACATACTTTTGCTCATCATCTTT
TGATTGAGCAATCATTTAATTATTTAAAAGAGGGTTCTTTTGCCATTTTCCTAGCTCCAGAAGATTTACTGACAAGTCCT
CAAGGACCACTATTAAAGGAGTGGATTAGTAAACATGGGAGTGTGATGGCTGTCATCACTTTACCAAAATCACTTTTTAA
TGCTGATGCTAAGGCGATTTATGTTTTGAAAAAGGGACCGGCTGCACATGCAACTTTTGCTCACCCTTTGTCTTCACTGA
CAGACAGAGAAAGTTTAGAAGTCTTTATGGAAGAATTTACAAAAATTGTAAAATTATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2A9ILQ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA140

48.882

100

0.49
  comYH Streptococcus mutans UA159

48.562

100

0.487

Multiple sequence alignment