Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   GPW69_RS10110 Genome accession   NZ_LR738724
Coordinates   2094685..2095971 (+) Length   428 a.a.
NCBI ID   WP_014636735.1    Uniprot ID   -
Organism   Streptococcus suis isolate 9401240     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2089685..2100971
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPW69_RS10075 - 2089967..2090524 (-) 558 WP_044674666.1 hypothetical protein -
  GPW69_RS10080 - 2090768..2091484 (-) 717 WP_074391250.1 DUF554 domain-containing protein -
  GPW69_RS10085 - 2091488..2092234 (-) 747 WP_074391251.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  GPW69_RS10090 prmA 2092236..2093189 (-) 954 WP_074391252.1 50S ribosomal protein L11 methyltransferase -
  GPW69_RS10100 - 2093786..2094139 (-) 354 WP_014636733.1 ASCH domain-containing protein -
  GPW69_RS10105 - 2094141..2094611 (-) 471 WP_014636734.1 DUF3013 family protein -
  GPW69_RS10110 rarA 2094685..2095971 (+) 1287 WP_014636735.1 replication-associated recombination protein A Machinery gene
  GPW69_RS10125 nrdG 2096451..2097008 (-) 558 WP_012027991.1 anaerobic ribonucleoside-triphosphate reductase activating protein -
  GPW69_RS10130 - 2097195..2097689 (-) 495 WP_074391253.1 GNAT family N-acetyltransferase -
  GPW69_RS10135 - 2097691..2097897 (-) 207 WP_074391254.1 metallophosphoesterase -
  GPW69_RS10820 - 2097912..2098046 (-) 135 WP_258526609.1 hypothetical protein -
  GPW69_RS10825 - 2098048..2098182 (-) 135 WP_014638808.1 hypothetical protein -
  GPW69_RS10145 nrdD 2098275..2100446 (-) 2172 WP_074391255.1 anaerobic ribonucleoside-triphosphate reductase -

Sequence

Protein


Download         Length: 428 a.a.        Molecular weight: 47389.99 Da        Isoelectric Point: 6.2932

>NTDB_id=1007194 GPW69_RS10110 WP_014636735.1 2094685..2095971(+) (rarA) [Streptococcus suis isolate 9401240]
MPANLALRMRPKSIDEVIGQEHLVGPGKIIRRMIDANMLSSMILYGPPGIGKTSIASAIAGTTKYAFRTFNATTDNQKRL
QEIAEEAKFSGGLVLMLDEIHRLNKTKQDFLLPLLENGNIIMIGATTENPFFSILPAIRSRVQIFELQPLQTSHIRQALE
LALTDSERGFDFPITIEPEALDFLANATNGDLRAAYNSLELAVLSTKESDDGSRHIDLDAVENSLQKSYISMDKNGDAHY
DILSALQKSIRGSDVNASLHYAARLIEAEDLPSLARRLMVIAYEDIGLANPEAQIHTVTALEAAQKIGFPEARILIANVV
VDLALSPKSNSAYQAMDAALADLRKNGHLPIPNHLRDGHYAGSKELGNAIGYQYPHAYPEKWVDQQYLPDKLLNADYFTA
NDTGKYERALGMTQEKIKNLKKNRRQNP

Nucleotide


Download         Length: 1287 bp        

>NTDB_id=1007194 GPW69_RS10110 WP_014636735.1 2094685..2095971(+) (rarA) [Streptococcus suis isolate 9401240]
ATGCCAGCCAATCTCGCCCTTCGTATGCGGCCCAAATCCATTGATGAAGTCATCGGTCAGGAACACCTGGTCGGTCCTGG
AAAGATTATCCGCCGCATGATTGATGCCAATATGCTGTCGTCCATGATTCTCTACGGTCCGCCTGGGATTGGCAAAACCT
CGATTGCGTCCGCCATTGCTGGTACGACCAAGTATGCCTTTCGGACCTTTAATGCCACGACCGACAACCAAAAACGCCTG
CAGGAAATCGCTGAAGAGGCCAAGTTTTCTGGCGGTCTGGTCCTCATGCTCGATGAAATCCACCGTCTCAACAAGACCAA
ACAAGACTTCCTGCTTCCTCTCTTGGAAAATGGCAATATCATCATGATTGGGGCAACGACGGAAAATCCCTTCTTCTCAA
TTCTGCCTGCCATTCGCAGTCGAGTGCAGATTTTTGAATTACAACCTTTGCAAACCAGCCACATCCGACAGGCCTTGGAA
CTGGCTCTGACAGACAGTGAACGTGGTTTTGACTTCCCCATTACCATTGAGCCTGAGGCTCTGGATTTCCTAGCCAACGC
CACCAACGGTGACCTACGTGCTGCTTACAATTCGCTAGAATTAGCTGTGCTTTCGACCAAGGAAAGTGATGACGGTAGCC
GCCACATTGATCTGGACGCCGTGGAAAATAGCCTGCAAAAGTCCTACATCAGCATGGACAAGAACGGCGATGCCCACTAC
GACATCCTCTCGGCTCTGCAAAAATCCATTCGGGGTAGCGATGTCAATGCCAGCCTCCACTACGCCGCCCGTTTGATTGA
GGCGGAAGACCTGCCTAGTCTGGCCCGTCGCTTGATGGTCATTGCCTACGAAGACATCGGCTTGGCCAATCCAGAGGCTC
AGATTCATACGGTGACGGCCCTTGAAGCTGCCCAGAAAATCGGCTTTCCAGAAGCACGGATTTTGATTGCCAATGTGGTA
GTCGATTTGGCTCTTTCTCCCAAGTCCAATTCTGCCTATCAGGCTATGGATGCAGCTCTGGCTGATTTGCGGAAAAACGG
TCATCTGCCTATTCCAAATCACCTGCGGGACGGCCATTATGCTGGTAGTAAGGAGCTGGGAAATGCTATTGGCTACCAGT
ATCCGCATGCCTATCCTGAAAAATGGGTGGACCAGCAATACCTGCCCGATAAGTTACTGAATGCGGACTACTTCACCGCC
AACGACACCGGCAAATACGAGCGTGCCTTGGGTATGACCCAAGAAAAGATAAAAAATTTGAAAAAAAATAGACGCCAAAA
TCCTTGA

Domains

Predicted by InterProScan.

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-416)

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)

AAA C-terminal domain (AAA_assoc_2)

(173-251)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

59.33

97.664

0.579

Multiple sequence alignment