Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   GPW69_RS01765 Genome accession   NZ_LR738724
Coordinates   336685..337473 (+) Length   262 a.a.
NCBI ID   WP_023369388.1    Uniprot ID   -
Organism   Streptococcus suis isolate 9401240     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 331685..342473
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPW69_RS01740 - 332302..333261 (-) 960 WP_044683840.1 asparaginase -
  GPW69_RS10675 - 333331..334696 (+) 1366 Protein_305 Cof-type HAD-IIB family hydrolase -
  GPW69_RS01755 - 334712..335164 (-) 453 WP_004195772.1 universal stress protein -
  GPW69_RS01760 - 335319..336533 (+) 1215 WP_014735452.1 pyridoxal phosphate-dependent aminotransferase -
  GPW69_RS01765 codY 336685..337473 (+) 789 WP_023369388.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  GPW69_RS01770 - 337475..338026 (+) 552 WP_074391011.1 cysteine hydrolase family protein -
  GPW69_RS01775 rplS 338442..338789 (+) 348 WP_027971744.1 50S ribosomal protein L19 -
  GPW69_RS01780 - 338976..339650 (+) 675 WP_012774968.1 hydrolase -
  GPW69_RS01785 gatC 339868..340170 (+) 303 WP_024408528.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -
  GPW69_RS01790 gatA 340170..341636 (+) 1467 WP_044683839.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA -

Sequence

Protein


Download         Length: 262 a.a.        Molecular weight: 29334.37 Da        Isoelectric Point: 4.6190

>NTDB_id=1007129 GPW69_RS01765 WP_023369388.1 336685..337473(+) (codY) [Streptococcus suis isolate 9401240]
MTTLLEKTRNITSILKRSEEQLAEELPYNAIAEHLSAIIDCNSCIINSEGEVLGYHMNYETNNDRVEEFFQNKQFPEGYV
KAVAQVYDTQVNLPVESELTAIPVESRSTYPNGLTTIAPIHVTGIRFGSLIIWRNDEQFHDDDLILVEIAATVVGIQLLN
FQREEDEKNIRRRAAVNMAVNTLSYSEMKAVAAILGELDGNEGQLTASVIADRIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVLIPAIFDEIKKRDY

Nucleotide


Download         Length: 789 bp        

>NTDB_id=1007129 GPW69_RS01765 WP_023369388.1 336685..337473(+) (codY) [Streptococcus suis isolate 9401240]
ATGACAACATTATTAGAGAAGACACGGAATATTACTTCTATTTTGAAGCGTTCCGAAGAGCAATTGGCAGAAGAATTGCC
TTACAATGCCATTGCTGAGCATTTATCAGCTATTATTGACTGCAACTCGTGCATCATTAATAGTGAAGGTGAGGTTTTGG
GATACCACATGAACTATGAGACGAACAATGATCGTGTGGAAGAATTTTTCCAAAATAAACAATTCCCAGAAGGATATGTA
AAAGCAGTTGCGCAGGTTTACGATACGCAGGTTAATTTGCCTGTCGAGAGCGAGTTGACTGCCATCCCTGTCGAATCACG
TTCGACCTATCCAAATGGTCTGACAACGATAGCGCCTATCCATGTGACGGGGATTCGTTTTGGTTCGCTTATTATTTGGC
GGAATGATGAGCAGTTTCACGATGATGATTTGATTTTGGTGGAGATTGCGGCAACAGTAGTTGGTATTCAGTTACTTAAT
TTCCAACGGGAAGAAGACGAGAAGAATATCCGTCGTCGTGCGGCAGTTAATATGGCGGTAAATACGCTATCTTACTCAGA
AATGAAGGCAGTTGCAGCTATTTTGGGTGAATTGGATGGCAATGAGGGGCAATTGACTGCTTCTGTGATTGCAGATCGTA
TCGGCATTACACGCTCGGTGATTGTGAATGCACTGCGTAAGTTGGAGAGTGCAGGGATTATTGAAAGTCGTTCTTTGGGA
ATGAAGGGGACTTATTTGAAAGTTCTCATCCCAGCTATTTTTGATGAAATTAAGAAACGTGACTACTAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(3-182)

CodY helix-turn-helix domain (HTH_CodY)

(202-258)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

59.16

100

0.592
  codY Bacillus subtilis subsp. subtilis str. 168

52.846

93.893

0.496