Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   GPW69_RS01075 Genome accession   NZ_LR738724
Coordinates   183726..186209 (-) Length   827 a.a.
NCBI ID   WP_074391356.1    Uniprot ID   -
Organism   Streptococcus suis isolate 9401240     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 178726..191209
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPW69_RS01050 dinB 179562..180629 (+) 1068 WP_024402036.1 DNA polymerase IV -
  GPW69_RS01055 - 180672..181091 (+) 420 WP_024402035.1 Rrf2 family transcriptional regulator -
  GPW69_RS01060 - 181226..181852 (+) 627 WP_024402034.1 NAD(P)-dependent oxidoreductase -
  GPW69_RS01065 - 181952..182872 (+) 921 WP_074391355.1 1-phosphofructokinase family hexose kinase -
  GPW69_RS01070 - 182920..183558 (+) 639 WP_169051083.1 endonuclease III domain-containing protein -
  GPW69_RS01075 recD/recD2/recDB 183726..186209 (-) 2484 WP_074391356.1 ATP-dependent RecD-like DNA helicase Machinery gene
  GPW69_RS01080 lepB 186272..186901 (-) 630 WP_074391357.1 signal peptidase I -
  GPW69_RS01085 rnhC 186911..187801 (-) 891 WP_074391358.1 ribonuclease HIII -
  GPW69_RS01090 - 187886..188869 (+) 984 WP_074391359.1 Gfo/Idh/MocA family protein -
  GPW69_RS01095 - 189218..190468 (+) 1251 WP_173018697.1 LysM peptidoglycan-binding domain-containing protein -

Sequence

Protein


Download         Length: 827 a.a.        Molecular weight: 92720.72 Da        Isoelectric Point: 4.5180

>NTDB_id=1007125 GPW69_RS01075 WP_074391356.1 183726..186209(-) (recD/recD2/recDB) [Streptococcus suis isolate 9401240]
MNEVYFTGTIDRIIFENPSNFYKILLLEIEETDADYDDYEIIVTGTIADVIEGEDYRFYGNLVTHPKYGQQLQISRYERS
KPTSAGLVKYFSSDHFKGIGRKTAEKIVELYGEDTIDKILAEPEKLTQITGLSSKNMQAFVEKLRLNYGTELILAKLAEY
GIPNKLAFQIQDQYKEKTLQIIEENPYQLVEDVQGLGFTIADRIAENLGIASDSPQRFRAGMLFSLIHRSMETGDTYVEA
RDLLEATLELLEKSRHTELDPAAVAKELTGLIADDKVQQEGTKIFDNSLYFAEHGIHKNLTRLMGKNGFKPFPRADVEAA
IAELESMSSLTYDDIQKEAIVQAITNPLFILTGGPGTGKTTVINGIIAVYAILHKIDLTRNREECPVLLAAPTGRAARRM
NELTGLPSATIHRHLGLVEGQEESYRDDYLDADFIIVDEFSMVDTWLANQLFQNISSQTQVLIVGDAEQLPSVSPGQVLA
DLLKIDKLPSITLERIYRQSDDSTIVTLASQIRQGALPSDFREKKADRSYFEAQNEQIPALIERIVGAAIKSGIPANEVQ
ILAPMYRGAAGIDQLNTMTQALLNPLEDGELEFLHNEQAFRQGDRVIHLVNDAEANVFNGDLGYITDLLPAKYTDSKQDE
ITINFDGSEVTYPRNEWYKITLAYAMSIHKSQGSEFQVVILPITRTSHRMLQRNLVYTAITRSKSKLILLGEISAFDYAV
KNAGTVRKTYLVPRFQGEMAEQDSKESLTENNESKTATQTQPPAQSDKPKQTEPVTENSQQLSLLDQDQPEKTSGQAREY
ILTVDNLLTIDPMIGIDQADIEEFFKA

Nucleotide


Download         Length: 2484 bp        

>NTDB_id=1007125 GPW69_RS01075 WP_074391356.1 183726..186209(-) (recD/recD2/recDB) [Streptococcus suis isolate 9401240]
ATGAACGAAGTGTATTTTACCGGTACTATTGACCGGATTATTTTTGAAAATCCTAGTAATTTTTATAAAATCCTTCTCCT
TGAAATCGAGGAGACAGACGCAGACTATGATGACTACGAAATTATTGTGACCGGAACGATTGCCGATGTCATTGAAGGAG
AAGACTATCGTTTCTACGGCAATCTAGTCACCCATCCCAAGTATGGTCAGCAGCTGCAAATTTCGCGTTACGAACGTAGC
AAGCCTACCTCAGCTGGTCTGGTTAAGTATTTCTCCAGCGACCATTTCAAGGGAATTGGACGTAAAACAGCGGAAAAAAT
CGTTGAGCTCTATGGCGAGGATACCATTGATAAGATTTTAGCTGAACCTGAAAAACTAACCCAAATCACAGGCCTATCCA
GCAAGAACATGCAGGCATTTGTGGAGAAACTCCGCCTCAATTATGGAACCGAGCTGATCTTGGCAAAACTAGCTGAGTAT
GGCATTCCCAATAAATTGGCCTTTCAAATCCAAGACCAGTATAAGGAAAAAACACTTCAGATTATTGAAGAAAACCCCTA
TCAACTGGTCGAAGATGTCCAGGGGCTCGGCTTTACCATTGCCGATAGGATTGCGGAAAATCTAGGAATTGCCAGCGATT
CCCCCCAACGCTTTCGGGCCGGTATGCTCTTTAGCCTCATTCATCGCTCCATGGAAACAGGCGATACCTATGTGGAGGCC
AGAGACTTGCTGGAAGCAACCCTTGAACTGCTGGAAAAATCCCGCCATACAGAGCTGGACCCCGCTGCTGTTGCCAAAGA
ATTGACGGGACTGATTGCAGACGACAAGGTACAGCAAGAAGGCACAAAGATTTTTGACAACAGCCTCTACTTTGCCGAAC
ATGGTATCCATAAAAACTTGACCCGCCTGATGGGAAAAAATGGCTTCAAGCCCTTCCCACGCGCAGACGTCGAGGCTGCC
ATAGCAGAGCTGGAAAGTATGTCTTCCCTAACCTACGATGACATTCAAAAAGAAGCCATTGTCCAAGCCATTACCAATCC
GCTATTCATTCTGACAGGTGGACCAGGAACTGGAAAGACAACGGTTATCAACGGTATTATCGCGGTCTATGCCATCTTGC
ATAAGATTGACCTGACTCGCAACCGAGAAGAATGCCCTGTCCTCCTAGCCGCTCCAACTGGACGAGCAGCCAGACGAATG
AATGAATTGACAGGCCTGCCTTCCGCCACCATCCACCGCCATCTCGGTCTGGTAGAAGGACAGGAAGAATCCTACCGTGA
TGATTATTTGGATGCCGACTTTATCATCGTGGATGAGTTTTCCATGGTAGATACTTGGTTGGCAAACCAGCTCTTCCAGA
ACATCTCCTCCCAGACCCAAGTTCTGATTGTCGGCGATGCGGAGCAATTACCTTCTGTCAGTCCCGGTCAGGTCCTAGCT
GACCTCTTGAAAATCGACAAGCTACCCAGCATCACTCTGGAACGCATCTACCGTCAATCCGATGATTCGACCATTGTTAC
CCTAGCCAGCCAGATTCGCCAAGGAGCTCTACCTAGCGATTTCCGTGAGAAAAAGGCTGACCGCTCCTATTTTGAAGCGC
AAAACGAACAAATTCCAGCTCTGATTGAACGCATTGTCGGCGCAGCTATCAAGTCAGGTATCCCTGCAAACGAAGTCCAA
ATCCTCGCTCCCATGTACCGTGGTGCCGCAGGCATTGACCAACTCAACACCATGACCCAGGCCCTGCTCAATCCCCTAGA
AGACGGTGAGCTGGAATTCCTCCACAACGAGCAGGCCTTCCGCCAAGGCGACCGAGTCATCCACCTTGTCAACGATGCTG
AGGCCAATGTCTTCAATGGTGATCTGGGCTATATTACTGACCTCCTGCCTGCCAAGTACACCGACTCCAAGCAGGACGAG
ATTACCATCAACTTCGACGGTAGCGAGGTCACCTATCCCCGTAATGAATGGTACAAGATTACCCTGGCCTATGCCATGTC
CATCCACAAGTCCCAAGGTAGCGAGTTCCAGGTGGTCATCCTTCCCATTACCCGCACCAGCCACCGCATGCTCCAGCGCA
ACCTGGTCTACACCGCCATCACCCGCTCCAAGAGCAAGCTCATCCTCCTAGGCGAAATCTCCGCCTTTGACTACGCCGTC
AAAAACGCCGGCACCGTCCGAAAAACCTATCTGGTCCCACGTTTCCAAGGGGAAATGGCAGAGCAGGACAGTAAGGAAAG
CCTGACTGAAAACAACGAAAGCAAAACAGCCACACAAACCCAGCCCCCTGCCCAGTCAGATAAACCAAAACAAACAGAGC
CCGTAACAGAAAACAGCCAACAACTGTCCCTTCTTGACCAAGACCAGCCAGAAAAAACAAGTGGACAAGCCAGAGAATAT
ATTCTGACTGTGGACAACCTGCTAACCATCGACCCCATGATCGGCATAGATCAGGCAGATATTGAAGAGTTTTTTAAAGC
ATAA

Domains

Predicted by InterProScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(663-710)

AAA domain (AAA_30)

(332-529)

Helix-hairpin-helix containing domain (HHH_RecD2)

(148-237)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(575-645)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

41.534

91.415

0.38

Multiple sequence alignment