Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   GPW68_RS01880 Genome accession   NZ_LR738723
Coordinates   351630..352418 (+) Length   262 a.a.
NCBI ID   WP_024406060.1    Uniprot ID   -
Organism   Streptococcus suis isolate GD-0088     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 346630..357418
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPW68_RS01855 - 346936..347895 (-) 960 WP_024381504.1 asparaginase -
  GPW68_RS11590 - 347965..349330 (+) 1366 Protein_314 Cof-type HAD-IIB family hydrolase -
  GPW68_RS01870 - 349346..349798 (-) 453 WP_004195772.1 universal stress protein -
  GPW68_RS01875 - 349953..351167 (+) 1215 WP_011921925.1 pyridoxal phosphate-dependent aminotransferase -
  GPW68_RS01880 codY 351630..352418 (+) 789 WP_024406060.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  GPW68_RS01885 - 352420..352971 (+) 552 WP_024406059.1 cysteine hydrolase family protein -
  GPW68_RS01890 rplS 353557..353904 (+) 348 WP_011921928.1 50S ribosomal protein L19 -
  GPW68_RS01895 - 354087..354761 (+) 675 WP_012774968.1 hydrolase -
  GPW68_RS01900 gatC 354979..355281 (+) 303 WP_024405610.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -
  GPW68_RS01905 gatA 355281..356747 (+) 1467 WP_024405609.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA -

Sequence

Protein


Download         Length: 262 a.a.        Molecular weight: 29293.42 Da        Isoelectric Point: 4.6797

>NTDB_id=1007032 GPW68_RS01880 WP_024406060.1 351630..352418(+) (codY) [Streptococcus suis isolate GD-0088]
MTTLLEKTRNITSILKRSEEQLAEELPYNAIAEHLSAIIDCNSCIINSEGEVLGYHMSYETNNDRVEEFFQNKQFPEGYV
KAVAQVYDTQVNLPVESELTAIPVESRSTYPNGLTTIAPIHVMGIRFGSLIIWRNDEQFHDDDLILVEIAATVVGIQLLN
FQREEDEKNIRRRAAVNMAVNTLSYSEMKAVAAILGELAGNEGQLTASVIADRIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVLIPAIFDEIKKRDY

Nucleotide


Download         Length: 789 bp        

>NTDB_id=1007032 GPW68_RS01880 WP_024406060.1 351630..352418(+) (codY) [Streptococcus suis isolate GD-0088]
ATGACAACATTATTAGAGAAGACACGGAATATTACTTCTATTTTGAAGCGTTCCGAAGAGCAATTGGCAGAAGAATTGCC
TTACAATGCTATTGCTGAACATCTATCAGCTATTATTGATTGCAATTCTTGTATTATTAATAGCGAAGGTGAAGTTTTGG
GATACCACATGAGTTATGAGACAAACAATGATCGTGTGGAAGAATTTTTCCAAAACAAACAATTCCCAGAAGGATATGTA
AAAGCAGTTGCGCAGGTTTACGATACGCAGGTTAATTTGCCTGTCGAGAGCGAGTTGACTGCCATCCCTGTCGAATCACG
CTCGACTTATCCAAACGGGCTGACAACGATAGCGCCTATCCACGTAATGGGGATTCGTTTTGGTTCGCTTATTATTTGGC
GGAATGATGAGCAGTTTCACGATGATGATTTGATTTTGGTTGAGATTGCGGCAACAGTAGTTGGTATTCAGTTACTTAAT
TTCCAACGGGAAGAAGACGAGAAGAATATCCGTCGTCGTGCGGCAGTTAATATGGCGGTAAATACACTATCTTACTCAGA
AATGAAAGCAGTTGCAGCTATTTTGGGTGAATTGGCTGGCAATGAGGGGCAATTGACTGCTTCTGTGATTGCAGATCGTA
TCGGTATTACACGCTCGGTGATTGTGAATGCACTGCGTAAGTTGGAGAGTGCAGGGATTATTGAAAGTCGTTCTTTGGGA
ATGAAGGGGACTTATTTGAAAGTTCTCATCCCAGCTATTTTTGATGAAATTAAGAAACGTGACTACTAA

Domains

Predicted by InterProScan.

CodY helix-turn-helix domain (HTH_CodY)

(202-258)

CodY GAF-like domain (CodY)

(3-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

58.779

100

0.588
  codY Bacillus subtilis subsp. subtilis str. 168

52.033

93.893

0.489

Multiple sequence alignment