Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   GPW68_RS01230 Genome accession   NZ_LR738723
Coordinates   211795..214284 (-) Length   829 a.a.
NCBI ID   WP_024405450.1    Uniprot ID   -
Organism   Streptococcus suis isolate GD-0088     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 206795..219284
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPW68_RS01205 - 207569..208600 (+) 1032 WP_011921803.1 ABC transporter substrate-binding protein -
  GPW68_RS01210 - 208694..209503 (+) 810 WP_023369178.1 6-phosphogluconolactonase -
  GPW68_RS11850 - 209722..211756 (+) 2035 Protein_202 heavy metal translocating P-type ATPase -
  GPW68_RS01230 recD/recD2/recDB 211795..214284 (-) 2490 WP_024405450.1 ATP-dependent RecD-like DNA helicase Machinery gene
  GPW68_RS01235 lepB 214513..215142 (-) 630 WP_002935959.1 signal peptidase I -
  GPW68_RS01240 rnhC 215153..216043 (-) 891 WP_074389378.1 ribonuclease HIII -
  GPW68_RS01245 - 216128..217111 (+) 984 WP_074389377.1 Gfo/Idh/MocA family protein -
  GPW68_RS01255 - 217460..218659 (+) 1200 WP_074389375.1 LysM peptidoglycan-binding domain-containing protein -

Sequence

Protein


Download         Length: 829 a.a.        Molecular weight: 93130.43 Da        Isoelectric Point: 4.5799

>NTDB_id=1007028 GPW68_RS01230 WP_024405450.1 211795..214284(-) (recD/recD2/recDB) [Streptococcus suis isolate GD-0088]
MNEVYVTGTIDRIIFENPSNFYKILLLEIEETDADYDDYEIIVTGTIADVIEGEDYRFYGNLVTHPKYGQQLQISRYERS
KPTSAGLVKYFSSEHFKGIGRKTAEKIVELYGDDTIDKILAEPEKLTQITGLSSKNMQAFVEKLRLNYGTELILAKLAEY
GIPNKLAFQIQDQYKEKTLQIIEENPYQLVEDVQGLGFTIADRIAENLGIASDAPQRFRAGMLFSLIHRSMETGDTYVEA
RDLLEATLELLEKSRHTELDPAAVAHELTGLIADDKVQQEGTKIFDNSLYFAEHGIHKNLTRLMGKNGFKPFPRADVEAA
IAELESMSSLTYDDIQKEAIVQAITNPLFILTGGPGTGKTTVINGIIAVYAILHKIDLTRNREECPVLLAAPTGRATRRM
NELTGLPSATIHRHLGLVEGQEESYRDDYLDADFIIVDEFSMVDTWLANQLFQNISSQTQVLIVGDAEQLPSVSPGQVLA
DLLKIDKLPSITLERIYRQSDDSTIVTLASQIRQGALPSDFREKKADRSYFEAQNEQIPALIERIVGAAIKSGIPANEVQ
ILAPMYRGAAGIDQLNTMTQALLNPLEEGELEFLHNEQAFRQGDRVIHLVNDAEANVFNGDLGYITDLLPAKYTDSKQDE
ITINFDGSEVTYPRNEWYKITLAYAMSIHKSQGSEFQVVILPITRTSHRMLQRNLVYTAITRSKSKLILLGEISAFDYAV
KNAGTVRKTYLVPRFQGEMAEQESKESLIKKDESKTATTTQTQPPTQPDRKEQVKVVKENNQQLSLLDQDQPEKTSPQPT
EYILTVDNLLTIDPMIGIEQADIEEFFKA

Nucleotide


Download         Length: 2490 bp        

>NTDB_id=1007028 GPW68_RS01230 WP_024405450.1 211795..214284(-) (recD/recD2/recDB) [Streptococcus suis isolate GD-0088]
ATGAACGAAGTGTATGTTACCGGTACTATTGACCGGATTATTTTTGAAAATCCTAGTAATTTTTATAAAATCCTTCTCCT
TGAAATCGAGGAGACAGACGCAGACTATGATGACTACGAAATTATTGTGACCGGAACGATTGCCGATGTCATTGAAGGAG
AAGACTATCGTTTCTATGGCAATCTGGTCACCCATCCCAAGTATGGTCAGCAGCTGCAAATTTCGCGTTACGAACGCAGC
AAGCCTACCTCAGCTGGTCTGGTCAAGTATTTCTCCAGCGAGCATTTCAAGGGAATTGGACGTAAAACAGCTGAGAAAAT
TGTGGAGCTATATGGCGATGATACCATTGATAAGATTTTGGCCGAGCCTGAAAAACTAACTCAAATCACAGGCCTATCCA
GCAAGAACATGCAGGCATTTGTGGAGAAACTCCGCCTCAATTATGGAACCGAGTTGATCTTGGCAAAACTAGCCGAGTAT
GGCATTCCCAATAAATTGGCCTTTCAAATCCAAGACCAGTATAAGGAAAAAACACTTCAGATTATTGAAGAAAATCCCTA
TCAACTGGTCGAAGATGTCCAGGGGCTCGGCTTTACCATTGCCGATAGGATTGCGGAAAACCTGGGAATTGCCAGTGATG
CACCCCAACGTTTTCGGGCAGGTATGCTCTTTAGCCTCATTCATCGCTCCATGGAAACAGGCGATACCTATGTGGAGGCC
AGAGACTTGCTGGAAGCTACCCTTGAACTGCTGGAAAAATCCCGCCATACCGAGCTGGACCCCGCTGCTGTTGCCCACGA
GTTGACAGGACTGATTGCAGACGACAAGGTACAGCAAGAAGGCACAAAGATTTTTGACAACAGCCTCTACTTTGCCGAAC
ATGGTATCCATAAAAACCTGACCCGTCTGATGGGAAAAAATGGTTTCAAACCCTTCCCACGCGCAGATGTCGAGGCTGCC
ATAGCAGAGCTGGAAAGCATGTCTTCTCTCACCTACGATGACATTCAAAAAGAAGCCATTGTCCAAGCCATTACCAATCC
GCTTTTCATTCTGACAGGCGGACCAGGGACTGGAAAAACAACGGTTATCAACGGCATTATCGCAGTCTATGCTATCTTGC
ATAAGATTGACTTGACGCGAAACCGAGAAGAATGCCCAGTCCTCCTAGCCGCTCCAACTGGACGAGCAACCAGACGGATG
AATGAGTTGACAGGGCTGCCTTCCGCCACCATCCACCGCCATCTCGGTCTGGTAGAAGGACAGGAGGAATCCTACCGTGA
TGATTATTTGGATGCCGACTTTATCATCGTGGATGAGTTTTCTATGGTAGATACTTGGTTGGCAAACCAGCTCTTCCAGA
ATATCTCCTCCCAGACCCAAGTTCTGATTGTCGGCGATGCCGAGCAATTGCCTTCTGTCAGCCCCGGTCAAGTACTTGCT
GACCTCTTGAAAATTGACAAGCTGCCCAGCATTACTCTAGAACGTATCTATCGTCAATCCGATGATTCGACCATTGTTAC
CCTAGCCAGCCAGATTCGACAGGGTGCTCTGCCTAGCGATTTTCGTGAGAAAAAGGCTGACCGTTCCTATTTTGAAGCCC
AGAATGAACAAATTCCAGCCCTGATTGAGCGCATTGTCGGCGCAGCCATCAAGTCAGGTATTCCTGCAAACGAGGTACAG
ATCCTCGCTCCCATGTACCGTGGGGCCGCAGGCATCGACCAACTCAACACTATGACCCAGGCCCTGCTCAATCCACTGGA
AGAGGGAGAGTTAGAATTCCTGCATAACGAGCAAGCCTTCCGCCAAGGCGACCGGGTCATTCATTTAGTCAACGATGCCG
AGGCCAATGTCTTCAATGGTGATTTAGGCTACATCACCGACCTCCTTCCTGCCAAGTACACCGACTCCAAGCAGGACGAA
ATTACCATCAACTTCGACGGTAGCGAGGTCACCTATCCCCGAAACGAATGGTACAAGATTACCCTGGCCTATGCCATGTC
CATCCACAAGTCCCAAGGCAGCGAGTTTCAGGTAGTCATCCTCCCCATCACCCGCACCAGCCACCGTATGCTCCAGCGCA
ATCTGGTCTACACCGCCATCACCCGCTCCAAGAGCAAGCTCATCCTCCTGGGCGAAATCTCCGCCTTCGACTACGCCGTC
AAAAACGCCGGCACCGTCCGAAAAACCTATCTGGTCCCACGTTTCCAAGGGGAAATGGCAGAGCAGGAAAGTAAGGAAAG
CCTGATTAAAAAAGACGAAAGCAAAACAGCTACAACCACGCAAACCCAGCCCCCTACTCAGCCAGACAGAAAAGAACAGG
TTAAAGTAGTCAAAGAAAACAACCAACAACTCTCCCTTCTTGATCAAGACCAGCCAGAAAAAACAAGTCCCCAACCCACA
GAATACATTTTGACTGTAGACAACCTACTAACCATCGACCCCATGATTGGCATAGAACAGGCAGATATTGAAGAATTTTT
TAAAGCATAA

Domains

Predicted by InterProScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(663-710)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(575-645)

Helix-hairpin-helix containing domain (HHH_RecD2)

(148-237)

AAA domain (AAA_30)

(332-529)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

41.153

92.039

0.379