Detailed information NTG1006977

Bioinformatically predicted

Overview

• Name: xcpW
• Type: Machinery gene
• Locus tag: ABLB95_RS05595
• Genome accession: NZ_CP157451
• Coordinates: 1199235..1199870 (+)
• Length: 211 a.a.
• NCBI ID: WP_005025578.1
• Uniprot ID: A0A062BXX8
• Organism: Acinetobacter radioresistens strain XH1688
• Function: pseudopilus assembly (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1194235..1204870

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABLB95_RS05560 (ABLB95_05560)	kdsB	1194697..1195458 (+)	762	WP_005025565.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
ABLB95_RS05565 (ABLB95_05565)	-	1195476..1196459 (+)	984	WP_348908727.1	DNA polymerase III subunit delta' C-terminal domain-containing protein	-
ABLB95_RS05570 (ABLB95_05570)	-	1196478..1196819 (+)	342	WP_005014707.1	PilZ domain-containing protein	-
ABLB95_RS05575 (ABLB95_05575)	-	1196863..1197636 (+)	774	WP_101162144.1	TatD family hydrolase	-
ABLB95_RS05580 (ABLB95_05580)	-	1197676..1198284 (+)	609	WP_101162145.1	TetR/AcrR family transcriptional regulator	-
ABLB95_RS05585 (ABLB95_05585)	-	1198299..1198862 (+)	564	WP_005025574.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
ABLB95_RS05590 (ABLB95_05590)	xcpV	1198852..1199238 (+)	387	WP_005025576.1	type II secretion system minor pseudopilin GspI	Machinery gene
ABLB95_RS05595 (ABLB95_05595)	xcpW	1199235..1199870 (+)	636	WP_005025578.1	type II secretion system minor pseudopilin GspJ	Machinery gene
ABLB95_RS05600 (ABLB95_05600)	gspK	1199893..1200837 (+)	945	WP_005025579.1	type II secretion system minor pseudopilin GspK	-
ABLB95_RS05605 (ABLB95_05605)	-	1200934..1201530 (+)	597	WP_005014693.1	6-carboxytetrahydropterin synthase	-
ABLB95_RS05610 (ABLB95_05610)	ung	1201575..1202288 (+)	714	WP_005014692.1	uracil-DNA glycosylase	-
ABLB95_RS05615 (ABLB95_05615)	-	1202285..1203409 (+)	1125	WP_005014691.1	enoyl-CoA hydratase/isomerase family protein	-
ABLB95_RS05620 (ABLB95_05620)	tadA	1203413..1203904 (+)	492	WP_005014690.1	tRNA adenosine(34) deaminase TadA	-
ABLB95_RS05625 (ABLB95_05625)	-	1203987..1204421 (+)	435	WP_005014689.1	SRPBCC family protein	-

Sequence

Protein

• Length: 211 a.a.
• Molecular weight: 24116.49 Da
• Isoelectric Point: 5.3446

>NTDB_id=1006977 ABLB95_RS05595 WP_005025578.1 1199235..1199870(+) (xcpW) [Acinetobacter radioresistens strain XH1688]
MKYKWGFTLVELLVAIAIFAALSALGWKVFDYLIKVKERNSIHEQNLARLQEAYQQILRDSLQLIPLTANNGGELRPALE
LNDQHFIFSKAGVTDPLGQGLGPYERIEYQYSSADQKLYRLKYQNLNTSTAIQPQSSVLLDQVEQYRISVLNPAELNRWP
EGVLDPASQSEQLKILPRGFKINLTINGTEYEWIYSLLNTDDLKEKTINPS

Nucleotide

• Length: 636 bp

>NTDB_id=1006977 ABLB95_RS05595 WP_005025578.1 1199235..1199870(+) (xcpW) [Acinetobacter radioresistens strain XH1688]
ATGAAATATAAATGGGGTTTTACTCTTGTGGAGCTGTTGGTCGCAATTGCGATTTTTGCAGCACTCTCTGCGCTGGGTTG
GAAGGTTTTTGATTATCTGATCAAAGTAAAAGAACGAAATAGTATACATGAGCAAAATCTTGCCCGGTTACAGGAAGCTT
ATCAGCAAATCTTACGTGACAGCCTGCAACTGATTCCATTAACTGCAAATAATGGAGGAGAGTTGCGTCCTGCACTTGAA
TTAAACGATCAGCATTTTATTTTTAGTAAAGCTGGTGTAACTGATCCTTTGGGCCAAGGGCTGGGGCCTTATGAGCGGAT
CGAATATCAATACAGTAGTGCAGATCAGAAACTGTACCGGTTAAAATATCAAAACCTGAATACTTCAACTGCTATTCAGC
CCCAGTCAAGTGTGCTTCTTGATCAGGTCGAGCAATACCGGATTAGCGTCTTAAATCCGGCTGAACTGAACAGATGGCCT
GAAGGCGTATTAGATCCTGCTTCCCAATCAGAACAGCTTAAAATTCTACCGCGCGGTTTTAAAATCAATCTGACCATAAA
TGGAACTGAATACGAATGGATTTACAGCCTTTTAAATACAGATGATTTAAAAGAAAAAACAATAAATCCATCTTAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein J (T2SSJ) (59-190)

• Prokaryotic N-terminal methylation motif (N_methyl) (6-25)

3D structure

• AlphaFold DB: A0A062BXX8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
xcpW	Acinetobacter baumannii D1279779	65.657	93.839	0.616