Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   ABLC01_RS01475 Genome accession   NZ_CP157442
Coordinates   314787..315428 (+) Length   213 a.a.
NCBI ID   WP_002116944.1    Uniprot ID   A0A009RUZ9
Organism   Acinetobacter pittii strain XH1728     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 309787..320428
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABLC01_RS01455 (ABLC01_01455) - 309831..310163 (+) 333 WP_002116981.1 hypothetical protein -
  ABLC01_RS01460 (ABLC01_01460) rrmA 310166..310990 (+) 825 WP_080777164.1 putative RNA methyltransferase -
  ABLC01_RS01465 (ABLC01_01465) ponA 311006..313567 (-) 2562 WP_032057246.1 penicillin-binding protein PBP1a -
  ABLC01_RS01470 (ABLC01_01470) pilM 313729..314787 (+) 1059 WP_005067078.1 pilus assembly protein PilM Machinery gene
  ABLC01_RS01475 (ABLC01_01475) pilN 314787..315428 (+) 642 WP_002116944.1 PilN domain-containing protein Machinery gene
  ABLC01_RS01480 (ABLC01_01480) pilO 315425..316204 (+) 780 WP_032057248.1 type 4a pilus biogenesis protein PilO Machinery gene
  ABLC01_RS01485 (ABLC01_01485) pilP 316216..316743 (+) 528 WP_005067086.1 pilus assembly protein PilP Machinery gene
  ABLC01_RS01490 (ABLC01_01490) pilQ 316806..318971 (+) 2166 WP_032063183.1 type IV pilus secretin PilQ Machinery gene
  ABLC01_RS01495 (ABLC01_01495) aroK 318983..319552 (+) 570 WP_002116987.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23921.36 Da        Isoelectric Point: 5.4186

>NTDB_id=1006862 ABLC01_RS01475 WP_002116944.1 314787..315428(+) (pilN) [Acinetobacter pittii strain XH1728]
MATINLLPWRDGLREQRKKQFIILCFGVVVLGITTVFAGWFYLNQKLNDQEQANQLIISTNQNLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPAAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMSSFLA
TEEKKDKAISSLLPRVEDSYGSFVVTVDVGEMGVTTTDDTANTSVGTDKEAAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=1006862 ABLC01_RS01475 WP_002116944.1 314787..315428(+) (pilN) [Acinetobacter pittii strain XH1728]
ATGGCAACAATTAATTTACTCCCTTGGCGTGATGGGCTTAGGGAGCAGCGTAAAAAACAATTTATTATTTTATGTTTTGG
GGTCGTTGTTTTGGGGATAACCACTGTATTTGCAGGGTGGTTTTATTTGAATCAAAAATTAAATGATCAAGAACAAGCAA
ATCAGCTCATCATCAGTACAAACCAGAATCTAGATCAACAACTTAAAACCTTAAATGGCTTGCAAGAACAGCGGGATGCA
ATTATTGAGCGTATGAAGCTCATTCAAGGTTTGCAAAGCCAGCGTCCGGTCGTTGTACGTTTGGTGGATGAATTAGTACG
TGTGACCCCGGCAGCCATGTATTTGACTAAATTCAGTCGAACCGGAGATAAATTTACGATTGAAGGTAAAGCGGAAAGTC
CAAATACGGTTGCAGAATTATTACGTAATCTCGAAGCATCGCCATGGTATCGCAACGCTTTTATGAGTTCTTTCTTGGCG
ACCGAAGAGAAAAAAGATAAGGCTATCAGTTCTTTGCTTCCTAGAGTTGAAGATAGCTATGGCAGTTTTGTTGTTACTGT
TGATGTAGGGGAAATGGGTGTGACTACAACAGATGATACCGCCAATACGTCTGTAGGTACGGATAAGGAGGCGGCAAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009RUZ9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

89.202

100

0.892
  comN Acinetobacter baylyi ADP1

71.569

95.775

0.685

Multiple sequence alignment