Detailed information
Bioinformatically predicted
Overview
| Name | xcpV | Type | Machinery gene |
| Locus tag | ABLB96_RS12600 | Genome accession | NZ_CP157428 |
| Coordinates | 2650087..2650467 (-) | Length | 126 a.a. |
| NCBI ID | WP_348897166.1 | Uniprot ID | A0AB39JV83 |
| Organism | Acinetobacter sp. XH1741 | ||
| Function | pseudopilus assembly (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2645087..2655467
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABLB96_RS12570 (ABLB96_12580) | tadA | 2645090..2645593 (-) | 504 | WP_348897160.1 | tRNA adenosine(34) deaminase TadA | - |
| ABLB96_RS12575 (ABLB96_12585) | - | 2645602..2646726 (-) | 1125 | WP_348897161.1 | enoyl-CoA hydratase/isomerase family protein | - |
| ABLB96_RS12580 (ABLB96_12590) | ung | 2646723..2647436 (-) | 714 | WP_348897162.1 | uracil-DNA glycosylase | - |
| ABLB96_RS12585 (ABLB96_12595) | - | 2647487..2648083 (-) | 597 | WP_348897163.1 | 6-carboxytetrahydropterin synthase | - |
| ABLB96_RS12590 (ABLB96_12600) | gspK | 2648313..2649272 (-) | 960 | WP_348897164.1 | type II secretion system minor pseudopilin GspK | - |
| ABLB96_RS12595 (ABLB96_12605) | xcpW | 2649272..2650087 (-) | 816 | WP_348897165.1 | type II secretion system minor pseudopilin GspJ | Machinery gene |
| ABLB96_RS12600 (ABLB96_12610) | xcpV | 2650087..2650467 (-) | 381 | WP_348897166.1 | type II secretion system minor pseudopilin GspI | Machinery gene |
| ABLB96_RS12605 (ABLB96_12615) | - | 2650457..2651011 (-) | 555 | WP_348897167.1 | type II secretion system protein | - |
| ABLB96_RS12610 (ABLB96_12620) | - | 2651021..2651629 (-) | 609 | WP_000375838.1 | TetR/AcrR family transcriptional regulator | - |
| ABLB96_RS12615 (ABLB96_12625) | - | 2651667..2652440 (-) | 774 | WP_348897168.1 | TatD family hydrolase | - |
| ABLB96_RS12620 (ABLB96_12630) | - | 2652458..2652799 (-) | 342 | WP_348897169.1 | PilZ domain-containing protein | - |
| ABLB96_RS12625 (ABLB96_12635) | - | 2652811..2653791 (-) | 981 | WP_348897170.1 | DNA polymerase III subunit delta' | - |
| ABLB96_RS12630 (ABLB96_12640) | kdsB | 2653803..2654564 (-) | 762 | WP_348897171.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | - |
Sequence
Protein
Download Length: 126 a.a. Molecular weight: 13980.18 Da Isoelectric Point: 9.4463
>NTDB_id=1006777 ABLB96_RS12600 WP_348897166.1 2650087..2650467(-) (xcpV) [Acinetobacter sp. XH1741]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAESTISPNVQKVDLQISLYDQDKGKVQSGITHMVFFNYPVKAK
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAESTISPNVQKVDLQISLYDQDKGKVQSGITHMVFFNYPVKAK
Nucleotide
Download Length: 381 bp
>NTDB_id=1006777 ABLB96_RS12600 WP_348897166.1 2650087..2650467(-) (xcpV) [Acinetobacter sp. XH1741]
ATGAAATCTAAAGGCTTTACCCTATTGGAGGTTATGGTCGCTCTAGCAATCTTTGCAGTAGCAGCTGTAGCCTTAACTAA
AGTGGCAATGCAATATACTCAATCTACTTCAAATGCGATTTTACGGACCAAAGCACAGTTTGTTGCTATGAATGAAGTCG
CTATGATGGAAATTAATCAAGAATGGTTACAAGGCACTCAAAGTAAACAGGTAACCTCTCAGGGGGAAACTTGGCAAATT
GATAAATCAGCTGAATCTACTATTAGTCCAAATGTTCAAAAAGTTGATTTGCAAATTAGTTTATATGATCAGGATAAGGG
AAAAGTACAAAGTGGTATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCGAAATAA
ATGAAATCTAAAGGCTTTACCCTATTGGAGGTTATGGTCGCTCTAGCAATCTTTGCAGTAGCAGCTGTAGCCTTAACTAA
AGTGGCAATGCAATATACTCAATCTACTTCAAATGCGATTTTACGGACCAAAGCACAGTTTGTTGCTATGAATGAAGTCG
CTATGATGGAAATTAATCAAGAATGGTTACAAGGCACTCAAAGTAAACAGGTAACCTCTCAGGGGGAAACTTGGCAAATT
GATAAATCAGCTGAATCTACTATTAGTCCAAATGTTCAAAAAGTTGATTTGCAAATTAGTTTATATGATCAGGATAAGGG
AAAAGTACAAAGTGGTATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCGAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| xcpV | Acinetobacter baumannii D1279779 |
96.032 |
100 |
0.96 |