Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   ABKP85_RS11530 Genome accession   NZ_CP157379
Coordinates   2254929..2255867 (-) Length   312 a.a.
NCBI ID   WP_011835969.1    Uniprot ID   A2RNG6
Organism   Lactococcus cremoris strain NZ3900     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2249929..2260867
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABKP85_RS11505 (ABKP85_11470) frr 2250107..2250664 (-) 558 WP_011835965.1 ribosome recycling factor -
  ABKP85_RS11510 (ABKP85_11475) pyrH 2250821..2251537 (-) 717 WP_004254608.1 UMP kinase -
  ABKP85_RS11515 (ABKP85_11480) - 2251622..2252074 (-) 453 WP_011835966.1 hypothetical protein -
  ABKP85_RS11520 (ABKP85_11485) - 2252204..2253391 (-) 1188 WP_011835967.1 acetate kinase -
  ABKP85_RS11525 (ABKP85_11490) - 2253550..2254737 (-) 1188 WP_011835968.1 acetate kinase -
  ABKP85_RS11530 (ABKP85_11495) comYH 2254929..2255867 (-) 939 WP_011835969.1 class I SAM-dependent methyltransferase Machinery gene
  ABKP85_RS11535 (ABKP85_11500) - 2255955..2256206 (-) 252 WP_011677086.1 DUF3165 family protein -
  ABKP85_RS11540 (ABKP85_11505) typA 2256307..2258139 (-) 1833 WP_031286284.1 translational GTPase TypA -
  ABKP85_RS11545 (ABKP85_11510) - 2258316..2258788 (-) 473 Protein_2248 hypothetical protein -
  ABKP85_RS11550 (ABKP85_11515) - 2258817..2259221 (-) 405 WP_011835970.1 hypothetical protein -
  ABKP85_RS11555 (ABKP85_11520) - 2259233..2259691 (-) 459 WP_011835971.1 hypothetical protein -
  ABKP85_RS11560 (ABKP85_11525) - 2259706..2260479 (-) 774 WP_011835972.1 hypothetical protein -

Sequence

Protein


Download         Length: 312 a.a.        Molecular weight: 34722.74 Da        Isoelectric Point: 4.3603

>NTDB_id=1006472 ABKP85_RS11530 WP_011835969.1 2254929..2255867(-) (comYH) [Lactococcus cremoris strain NZ3900]
MNMEKVAQGFELVVENITKLSEKLDTDFYDAFVEQNAAFLDGTDQGIVELSVNNDKLRQLNLSNKEWQKLFQFVLLKGSQ
VAPLQANHAMTPDAIGLIFNFIIEHLNKNSELRLIEFGSGMGNLAETLLVNLNKKVDYVGFEVDDLLLDLSASMAEIMGS
YAEFMQIDAVQKRLMEPADVVVSDLPIGFYPDDEVAKNFEVAATDGHTFAHHLLIEQSFNYLKDGAFAVFLAPEDLLTSV
QGPLLKEWISQHGSIMAVITLPSSLFNADAKAIYVLKKGPAAHVTFAHPLSSLTDRESLEIFMEEFTKTVKL

Nucleotide


Download         Length: 939 bp        

>NTDB_id=1006472 ABKP85_RS11530 WP_011835969.1 2254929..2255867(-) (comYH) [Lactococcus cremoris strain NZ3900]
ATGAACATGGAGAAAGTGGCTCAAGGTTTTGAGCTGGTAGTTGAAAATATTACAAAATTATCTGAGAAATTAGATACAGA
TTTTTATGATGCTTTTGTGGAACAAAATGCTGCTTTTTTAGATGGTACTGACCAAGGAATTGTTGAGCTGTCAGTAAATA
ATGACAAACTCCGTCAGTTAAATTTATCAAATAAAGAATGGCAAAAACTTTTTCAATTTGTTTTATTAAAAGGTTCGCAA
GTTGCGCCTCTTCAGGCAAATCATGCCATGACTCCTGATGCAATTGGTCTAATTTTCAACTTTATCATTGAACATCTCAA
TAAAAATTCTGAACTTCGCTTAATTGAGTTTGGTTCTGGTATGGGTAATCTTGCGGAAACATTGCTTGTTAATCTTAATA
AAAAAGTAGATTATGTTGGTTTTGAAGTCGATGATTTACTTTTAGATTTATCAGCTTCAATGGCTGAAATCATGGGAAGC
TATGCCGAATTTATGCAAATTGATGCGGTTCAAAAACGGTTGATGGAGCCAGCTGATGTTGTTGTTAGTGATTTGCCAAT
CGGTTTTTATCCAGATGATGAAGTTGCGAAAAATTTTGAAGTCGCTGCTACTGATGGACACACCTTTGCACATCATTTGT
TGATTGAACAATCATTTAATTACTTGAAAGATGGTGCTTTTGCAGTTTTCTTAGCACCGGAGGATTTACTGACAAGTGTA
CAAGGTCCACTTTTAAAAGAATGGATTAGTCAGCATGGAAGTATTATGGCGGTAATTACTTTACCAAGCTCACTTTTTAA
TGCTGATGCTAAAGCAATTTATGTCTTGAAAAAAGGGCCTGCTGCTCATGTGACCTTTGCTCATCCTTTGTCATCGTTGA
CAGACAGAGAAAGTTTAGAAATCTTTATGGAAGAATTTACAAAAACTGTAAAATTATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A2RNG6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA140

49.201

100

0.494
  comYH Streptococcus mutans UA159

48.882

100

0.49

Multiple sequence alignment