Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   FQT45_RS08990 Genome accession   NZ_LR595858
Coordinates   1817672..1818454 (-) Length   260 a.a.
NCBI ID   WP_007892088.1    Uniprot ID   G5K7W8
Organism   Streptococcus pseudoporcinus strain NCTC10228     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1812672..1823454
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FQT45_RS08965 (NCTC10228_01852) - 1813525..1814331 (-) 807 WP_077322746.1 pyruvate, water dikinase regulatory protein -
  FQT45_RS08970 (NCTC10228_01853) - 1814344..1814973 (-) 630 WP_077322745.1 helix-turn-helix transcriptional regulator -
  FQT45_RS08975 (NCTC10228_01854) - 1815154..1816116 (+) 963 WP_007892160.1 3-hydroxyacyl-CoA dehydrogenase -
  FQT45_RS08980 (NCTC10228_01855) - 1816824..1817084 (+) 261 WP_007892095.1 metal-sensitive transcriptional regulator -
  FQT45_RS08985 (NCTC10228_01856) - 1817119..1817667 (-) 549 WP_007892122.1 cysteine hydrolase family protein -
  FQT45_RS08990 (NCTC10228_01857) codY 1817672..1818454 (-) 783 WP_007892088.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  FQT45_RS08995 (NCTC10228_01858) - 1818647..1819861 (-) 1215 WP_077322744.1 pyridoxal phosphate-dependent aminotransferase -
  FQT45_RS09000 (NCTC10228_01859) - 1820058..1820510 (+) 453 WP_077322743.1 universal stress protein -
  FQT45_RS09005 (NCTC10228_01860) - 1820648..1822051 (-) 1404 WP_077322742.1 Cof-type HAD-IIB family hydrolase -
  FQT45_RS09010 (NCTC10228_01861) - 1822122..1823084 (+) 963 WP_077322741.1 asparaginase -

Sequence

Protein


Download         Length: 260 a.a.        Molecular weight: 28835.14 Da        Isoelectric Point: 4.5842

>NTDB_id=1006423 FQT45_RS08990 WP_007892088.1 1817672..1818454(-) (codY) [Streptococcus pseudoporcinus strain NCTC10228]
MPNLLEKTRKITSILQRSVDSLDAELPYNIMASRLADIIDCNACIINGGGTLLGYAMKYKTNNDRVEEFFEAQQFPESYV
KAASRVYDTEANLPIDNELTIFPIESKETYPEGLTTIAPIYGGGMRLGSLIIWRNDKKFNDDDLILIEISSTVVGIQLLN
LQTENLEETIRKQTAVNMAMNTLSYSEMKAVAAILGELDGNEGRLTASVIADRIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVINEGIFEKLKEI

Nucleotide


Download         Length: 783 bp        

>NTDB_id=1006423 FQT45_RS08990 WP_007892088.1 1817672..1818454(-) (codY) [Streptococcus pseudoporcinus strain NCTC10228]
ATGCCCAACTTATTAGAAAAAACTCGTAAAATTACCTCAATCCTTCAACGTTCCGTAGACAGTCTTGATGCTGAATTACC
ATACAATATTATGGCTTCCCGATTAGCGGATATCATTGACTGTAATGCCTGTATCATAAATGGTGGTGGTACCCTTTTGG
GGTATGCTATGAAGTACAAAACCAACAATGACCGCGTTGAGGAGTTTTTTGAAGCTCAGCAATTCCCAGAATCCTACGTT
AAAGCGGCTAGCCGAGTTTATGATACTGAGGCTAACTTGCCGATCGATAATGAATTAACCATCTTCCCTATTGAATCCAA
GGAGACCTATCCAGAAGGTTTAACAACTATTGCCCCGATTTACGGAGGTGGTATGCGTCTAGGGTCATTAATCATTTGGC
GTAATGATAAGAAATTTAATGATGATGATTTGATTCTGATTGAAATTTCGAGTACCGTAGTAGGTATTCAATTGTTGAAT
CTCCAAACTGAGAATTTGGAGGAGACAATTCGTAAACAGACAGCCGTTAATATGGCAATGAATACTTTGTCATACTCAGA
AATGAAAGCTGTAGCGGCTATTTTAGGAGAACTAGATGGAAATGAAGGCCGTTTAACTGCTTCAGTCATTGCTGATCGTA
TCGGCATTACCCGTTCAGTAATTGTTAATGCACTGCGTAAATTGGAGAGCGCGGGTATTATTGAAAGCCGTTCTTTAGGA
ATGAAAGGTACTTATCTTAAAGTTATCAACGAAGGTATCTTCGAAAAACTAAAGGAAATCTAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(3-182)

CodY helix-turn-helix domain (HTH_CodY)

(202-259)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G5K7W8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

66.148

98.846

0.654
  codY Bacillus subtilis subsp. subtilis str. 168

54.217

95.769

0.519