Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   M949_RS01860 Genome accession   NZ_CP006649
Coordinates   392711..393988 (-) Length   425 a.a.
NCBI ID   WP_038693285.1    Uniprot ID   -
Organism   Riemerella anatipestifer CH3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 387711..398988
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M949_RS01835 (M949_0390) - 388212..389960 (+) 1749 WP_038693275.1 TrkH family potassium uptake protein -
  M949_RS01840 (M949_0391) - 389968..390660 (+) 693 WP_014938997.1 TrkA family potassium uptake protein -
  M949_RS01845 (M949_0392) - 390664..391284 (+) 621 WP_038693277.1 CoA pyrophosphatase -
  M949_RS01850 (M949_0393) - 391313..392119 (+) 807 WP_038693279.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -
  M949_RS01855 (M949_0394) - 392103..392714 (+) 612 WP_038693281.1 L-threonylcarbamoyladenylate synthase -
  M949_RS01860 (M949_0395) rarA 392711..393988 (-) 1278 WP_038693285.1 replication-associated recombination protein A Machinery gene
  M949_RS01865 yidD 394068..394322 (+) 255 WP_038693287.1 membrane protein insertion efficiency factor YidD -
  M949_RS01870 (M949_0397) lgt 394330..395181 (+) 852 WP_038693290.1 prolipoprotein diacylglyceryl transferase -
  M949_RS01875 (M949_0398) mscL 395322..395693 (+) 372 WP_014939002.1 large conductance mechanosensitive channel protein MscL -
  M949_RS01880 (M949_0399) - 395767..396423 (+) 657 WP_014939003.1 YggS family pyridoxal phosphate-dependent enzyme -
  M949_RS01885 (M949_0400) - 396460..397644 (+) 1185 WP_004917716.1 sigma-54 dependent transcriptional regulator -

Sequence

Protein


Download         Length: 425 a.a.        Molecular weight: 47662.28 Da        Isoelectric Point: 6.5127

>NTDB_id=100637 M949_RS01860 WP_038693285.1 392711..393988(-) (rarA) [Riemerella anatipestifer CH3]
MNSNIPLAEKLRPKTLDEMLGQEHLTGKDGTIRKMLDTDRLNSLILWGPPGTGKTTLAEILSEQSGRKFFKLSAVSSGVK
EVREVIDEAQKQHLFSGKSPILFIDEIHRFNKSQQDSLLHAVEKGWVVLIGATTENPSFEVVSALLSRSQVYVLKPLSYE
KLEELATIAVARFNQDENTEFTIEDNQGFIQYSGGDARKLINSVEWVLNQYKGSGQNQLSSEAILKVLQETVPVYDKNGE
QHYDVISAFIKSIRGSDVNAALYWLGRMLVGGEDIKFIARRLLILAAEDIGLANPNAFTMANSCFQSVNVIGYPESRIIL
SECVIYLAVSPKSNSAYQAINEAMAMAKKTTHLPVPLHLRNAPTKLMKEMDYGKDYRYAHAYEGNFVSQEFFPEELSGVS
FYRSGDNATERKIKEQISKKWGDKY

Nucleotide


Download         Length: 1278 bp        

>NTDB_id=100637 M949_RS01860 WP_038693285.1 392711..393988(-) (rarA) [Riemerella anatipestifer CH3]
TTGAATTCAAATATTCCTTTAGCAGAGAAATTACGCCCTAAAACCTTAGATGAAATGCTTGGGCAAGAACATCTTACAGG
TAAAGACGGAACGATAAGAAAAATGTTGGATACTGACCGACTTAATTCTCTGATTTTATGGGGACCTCCAGGAACGGGTA
AAACTACCTTAGCAGAAATTCTTTCGGAGCAATCGGGACGAAAATTTTTTAAACTTTCTGCGGTTTCTAGTGGGGTGAAA
GAGGTAAGAGAAGTGATAGATGAGGCCCAAAAGCAACATTTGTTTTCTGGTAAATCTCCTATTTTATTTATAGATGAAAT
TCATAGATTTAACAAGTCACAACAGGATTCTTTGCTTCACGCTGTGGAAAAAGGCTGGGTGGTTTTGATAGGAGCAACTA
CCGAAAATCCTAGTTTTGAAGTAGTTTCTGCATTATTGTCTCGCTCTCAAGTTTACGTTTTAAAACCATTGAGCTACGAA
AAATTGGAGGAATTAGCTACTATTGCGGTCGCTCGTTTCAATCAAGATGAAAATACAGAGTTTACTATTGAAGATAATCA
AGGGTTTATACAATATTCGGGAGGAGATGCTAGAAAACTCATCAATTCGGTAGAGTGGGTGCTTAATCAGTATAAAGGTT
CTGGACAAAACCAGTTATCTAGTGAGGCTATTCTGAAAGTTTTACAAGAAACTGTACCTGTTTATGATAAAAATGGAGAG
CAGCATTATGATGTAATTTCAGCTTTTATAAAATCCATTAGAGGGAGCGATGTTAATGCTGCTTTGTATTGGTTAGGGAG
AATGCTCGTGGGGGGCGAAGATATTAAGTTTATTGCAAGGCGACTTTTGATATTGGCGGCAGAAGATATAGGCTTGGCTA
ACCCTAACGCTTTTACAATGGCTAACAGTTGTTTTCAGTCGGTTAATGTTATAGGTTATCCAGAATCTCGTATTATCCTT
AGCGAATGTGTGATTTATTTAGCGGTCTCACCTAAGAGTAATTCAGCGTATCAAGCTATCAATGAGGCGATGGCGATGGC
GAAAAAAACGACTCATTTGCCTGTGCCGTTGCACCTAAGAAATGCACCTACAAAACTGATGAAAGAAATGGACTATGGTA
AAGATTACCGCTACGCTCACGCCTACGAGGGAAATTTTGTATCACAAGAATTTTTTCCTGAAGAATTATCTGGAGTTTCT
TTTTATCGTTCAGGAGATAATGCTACCGAAAGAAAAATAAAAGAACAAATTTCTAAAAAGTGGGGCGATAAATATTAG

Domains

Predicted by InterProScan.

ATPase family associated with various cellular activities (AAA) (AAA)

(44-153)

AAA C-terminal domain (AAA_assoc_2)

(187-254)

MgsA AAA+ ATPase C terminal (MgsA_C)

(255-419)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

40.049

95.765

0.384

Multiple sequence alignment