Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGE   Type   Machinery gene
Locus tag   FQT45_RS00720 Genome accession   NZ_LR595858
Coordinates   115581..115874 (+) Length   97 a.a.
NCBI ID   WP_172604963.1    Uniprot ID   -
Organism   Streptococcus pseudoporcinus strain NCTC10228     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 110581..120874
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FQT45_RS00695 (NCTC10228_00143) - 111076..112602 (-) 1527 WP_143880457.1 IS1182 family transposase -
  FQT45_RS00700 (NCTC10228_00144) - 112826..113191 (+) 366 WP_077323559.1 DUF1033 family protein -
  FQT45_RS00705 (NCTC10228_00145) comGA 113273..114214 (+) 942 WP_077323560.1 competence type IV pilus ATPase ComGA Machinery gene
  FQT45_RS00710 (NCTC10228_00146) comGB 114126..115181 (+) 1056 WP_370737006.1 competence type IV pilus assembly protein ComGB Machinery gene
  FQT45_RS00715 (NCTC10228_00147) comGD 115181..115609 (+) 429 WP_223837016.1 competence type IV pilus minor pilin ComGD -
  FQT45_RS00720 (NCTC10228_00148) comGE 115581..115874 (+) 294 WP_172604963.1 competence type IV pilus minor pilin ComGE Machinery gene
  FQT45_RS00725 (NCTC10228_00149) comGF/cglF 115834..116295 (+) 462 WP_077323562.1 competence type IV pilus minor pilin ComGF Machinery gene
  FQT45_RS00730 (NCTC10228_00150) comGG 116273..116674 (+) 402 WP_077323563.1 competence type IV pilus minor pilin ComGG Machinery gene
  FQT45_RS00735 (NCTC10228_00151) comGH 116719..117675 (+) 957 WP_077323564.1 class I SAM-dependent methyltransferase Machinery gene
  FQT45_RS00740 (NCTC10228_00152) - 117731..118924 (+) 1194 WP_007895376.1 acetate kinase -
  FQT45_RS00745 (NCTC10228_00153) - 119266..119475 (+) 210 WP_007895522.1 helix-turn-helix transcriptional regulator -
  FQT45_RS00750 (NCTC10228_00154) - 119472..119924 (+) 453 WP_077323565.1 hypothetical protein -
  FQT45_RS00755 (NCTC10228_00155) - 119936..120583 (+) 648 WP_077323566.1 CPBP family intramembrane glutamic endopeptidase -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 11351.53 Da        Isoelectric Point: 11.6033

>NTDB_id=1006356 FQT45_RS00720 WP_172604963.1 115581..115874(+) (comGE) [Streptococcus pseudoporcinus strain NCTC10228]
MVPIKKRNLKAYILYESLLATAILIFIVTLFVTAISRQQREMARMRHRQEAMAVALMAVQTNQNQLQVNGCRIHVFKNQK
GLRISENHQEIFRITKK

Nucleotide


Download         Length: 294 bp        

>NTDB_id=1006356 FQT45_RS00720 WP_172604963.1 115581..115874(+) (comGE) [Streptococcus pseudoporcinus strain NCTC10228]
GTGGTACCTATCAAAAAACGAAATCTTAAAGCTTATATTTTATATGAGAGTTTACTAGCAACAGCAATTCTTATCTTTAT
TGTGACACTTTTTGTGACTGCCATTAGTAGACAACAAAGAGAAATGGCTAGGATGCGTCATCGTCAAGAAGCTATGGCAG
TAGCGTTAATGGCGGTTCAAACAAATCAGAACCAACTACAAGTAAATGGTTGCCGTATCCACGTATTTAAGAATCAAAAG
GGGCTTAGGATTAGTGAAAATCATCAGGAAATATTTAGGATTACAAAGAAATAA

Domains

Predicted by InterProScan.

Type II secretory pathway pseudopilin (ComGE)

(13-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGE Streptococcus mutans UA140

41.237

100

0.412
  comGE Streptococcus mutans UA159

41.237

100

0.412