Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   ABI157_RS09050 Genome accession   NZ_CP157369
Coordinates   1905842..1907653 (+) Length   603 a.a.
NCBI ID   WP_348816388.1    Uniprot ID   -
Organism   Faecalibacterium prausnitzii strain 5     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1900842..1912653
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABI157_RS09030 (ABI157_09030) - 1901128..1901784 (-) 657 WP_097785909.1 sortase -
  ABI157_RS09035 (ABI157_09035) - 1901847..1902845 (-) 999 WP_129872254.1 Na/Pi symporter -
  ABI157_RS09040 (ABI157_09040) - 1903050..1903559 (+) 510 WP_223451332.1 MarR family transcriptional regulator -
  ABI157_RS09045 (ABI157_09045) - 1903543..1905840 (+) 2298 WP_129872253.1 ABC transporter ATP-binding protein -
  ABI157_RS09050 (ABI157_09050) rcrQ 1905842..1907653 (+) 1812 WP_348816388.1 ABC transporter ATP-binding protein Regulator
  ABI157_RS09055 (ABI157_09055) - 1907856..1908782 (-) 927 WP_348816389.1 LysR family transcriptional regulator -
  ABI157_RS09060 (ABI157_09060) - 1908956..1910989 (+) 2034 WP_348816390.1 FAD-binding protein -
  ABI157_RS09065 (ABI157_09065) - 1911094..1912395 (-) 1302 WP_348816391.1 hypothetical protein -

Sequence

Protein


Download         Length: 603 a.a.        Molecular weight: 66750.99 Da        Isoelectric Point: 6.5143

>NTDB_id=1006349 ABI157_RS09050 WP_348816388.1 1905842..1907653(+) (rcrQ) [Faecalibacterium prausnitzii strain 5]
MPRPGRPTTERAKNFKGTLRQLIRTMSHYKLPLTAAMLFAILSTIFNIAGPKVLAKATTALANGWIARLRGTGSIDFAYI
GRILLFLLGMYLLSSAFSFIQGWLMTGLSQKVCYDFRRQISEKINRLPLAYFEKRTVGEVLSRITNDVDTLGQSLNQSIT
QLITSVTTMIGVLVMMLSISPRMTLIALLILPVSLALVLVVVKFSQKYFKAQQATLGVVNGQVEEVYAGHNVVKAFNREA
VVLADFNAANDKLYESAWKSQFLSGLMMPIMNFVGNLGYVAVAIVGSIFAANGVITIGDIQAFIQYVKNFTQPIQQLSQV
SNMLQSMAAAAERVFEFLNEPEEEQLADPARRADPADIDGQVTFDHVRFGYTPDKTVIHDFSCTVQPGQKVAIVGPTGAG
KTTMVKLLMRFYDVDAGSITLNGHNVRDFDRSALREGFGMVLQDTWLFKGTIMENIRYGRLDATDEEVIAAAKAANADHF
IRTLPGGYQMELNEDASNVSQGQKQLLTIARTILADNRILILDEATSSVDTRTEQRIQTAMDRLMEGRTSFVIAHRLSTI
RDADLILVMRDGDIVEQGTHDQLIEAGGFYADLYNSQFEDVVD

Nucleotide


Download         Length: 1812 bp        

>NTDB_id=1006349 ABI157_RS09050 WP_348816388.1 1905842..1907653(+) (rcrQ) [Faecalibacterium prausnitzii strain 5]
ATGCCCAGACCCGGACGTCCCACCACCGAGCGCGCCAAAAACTTTAAAGGCACGCTGCGGCAGCTCATCCGCACCATGAG
CCACTACAAGCTGCCCCTTACGGCAGCCATGCTGTTTGCTATTCTGTCCACCATCTTCAACATTGCAGGCCCCAAGGTGC
TGGCAAAAGCCACTACCGCCCTTGCCAACGGCTGGATCGCCCGGCTGCGCGGCACCGGCAGCATCGATTTTGCGTATATC
GGCCGCATTCTGCTGTTTTTGCTGGGAATGTACCTGCTGAGCAGCGCCTTCAGCTTTATTCAGGGCTGGCTGATGACCGG
CCTTTCCCAGAAGGTCTGCTACGACTTCCGCCGCCAGATCAGTGAAAAGATCAACCGCCTGCCGCTGGCGTACTTTGAAA
AGCGCACCGTGGGCGAGGTGCTCTCCCGCATCACCAACGATGTGGACACACTGGGCCAGAGCCTGAACCAGAGCATCACC
CAGCTGATCACCAGCGTGACTACCATGATCGGTGTGCTGGTGATGATGCTTTCCATCAGCCCCCGCATGACCCTGATCGC
CCTGCTGATCCTGCCGGTATCGCTGGCACTGGTGCTGGTGGTGGTCAAGTTCAGCCAGAAGTACTTCAAGGCACAGCAGG
CCACCCTGGGCGTGGTCAACGGTCAGGTTGAGGAAGTCTACGCCGGTCACAACGTGGTCAAGGCGTTTAACCGCGAAGCC
GTGGTACTGGCTGACTTCAACGCCGCCAACGATAAGCTGTACGAATCCGCATGGAAAAGCCAGTTCCTCTCCGGCCTGAT
GATGCCCATCATGAACTTTGTGGGCAACCTGGGCTATGTGGCGGTGGCCATCGTGGGCAGCATTTTTGCTGCAAACGGCG
TTATCACCATTGGTGATATTCAGGCTTTTATCCAGTACGTCAAAAACTTTACCCAGCCCATCCAGCAGCTTTCGCAGGTG
TCCAATATGCTGCAGAGCATGGCTGCTGCTGCCGAGCGGGTGTTCGAGTTTTTGAATGAGCCGGAGGAAGAGCAGCTGGC
AGACCCCGCCCGCCGCGCCGACCCCGCCGACATTGACGGACAGGTCACCTTTGACCATGTGCGCTTCGGCTACACCCCGG
ACAAGACCGTCATCCACGACTTCAGCTGCACGGTGCAGCCCGGCCAGAAGGTAGCCATCGTAGGCCCCACCGGTGCGGGC
AAGACCACCATGGTCAAGCTGCTGATGCGCTTTTACGATGTGGACGCCGGTTCCATCACCCTGAACGGCCACAATGTGCG
GGACTTTGACCGCAGCGCCCTGCGCGAAGGCTTTGGCATGGTGCTGCAGGACACATGGCTGTTCAAGGGCACCATCATGG
AGAACATCCGCTACGGTCGGCTGGACGCCACCGATGAAGAGGTGATTGCCGCCGCAAAGGCAGCCAACGCCGACCACTTT
ATCCGCACCCTGCCCGGCGGCTACCAGATGGAGCTGAACGAGGACGCCTCCAACGTCAGTCAGGGACAGAAGCAGCTGCT
CACCATCGCCCGCACTATTCTGGCAGATAACCGCATCCTGATTTTGGACGAGGCTACCAGCAGCGTGGATACCCGCACCG
AGCAGCGCATCCAGACCGCCATGGACCGCCTGATGGAAGGCCGCACCAGCTTTGTCATCGCCCACCGCCTTTCCACCATC
CGGGACGCCGACCTCATCCTTGTGATGCGGGACGGCGACATTGTGGAGCAGGGCACCCACGACCAGCTGATCGAGGCAGG
CGGCTTCTACGCTGACCTATACAACAGCCAGTTCGAGGATGTTGTGGATTAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(34-313)

ABC transporter (ABC_tran)

(379-527)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

51.107

97.347

0.498

Multiple sequence alignment