Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   ABGM96_RS17180 Genome accession   NZ_CP157360
Coordinates   3565971..3568346 (-) Length   791 a.a.
NCBI ID   WP_375563711.1    Uniprot ID   -
Organism   Peribacillus frigoritolerans strain C1141     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3560971..3573346
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABGM96_RS17165 dtd 3562493..3562936 (-) 444 WP_048683742.1 D-aminoacyl-tRNA deacylase -
  ABGM96_RS17170 - 3562952..3565150 (-) 2199 WP_034308787.1 RelA/SpoT family protein -
  ABGM96_RS17175 - 3565468..3565980 (-) 513 WP_034308789.1 adenine phosphoribosyltransferase -
  ABGM96_RS17180 recJ 3565971..3568346 (-) 2376 WP_375563711.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  ABGM96_RS17185 secDF 3568492..3570753 (-) 2262 WP_260088895.1 protein translocase subunit SecDF -
  ABGM96_RS17190 - 3570950..3571255 (-) 306 WP_034308797.1 post-transcriptional regulator -
  ABGM96_RS17195 spoVB 3571426..3572988 (+) 1563 WP_202186799.1 stage V sporulation protein B -

Sequence

Protein


Download         Length: 791 a.a.        Molecular weight: 88941.55 Da        Isoelectric Point: 4.8023

>NTDB_id=1006277 ABGM96_RS17180 WP_375563711.1 3565971..3568346(-) (recJ) [Peribacillus frigoritolerans strain C1141]
MLKPKTRWNLRTADENKVAVLAEELHITPLVAALLVNRGLDTIESARSFLFVKNQTFHDPFLLKDMDKAVYRIKEAIQNG
EKIRIFGDYDADGVTSTTVMMTALTRLGADVDFYIPNRFTEGYGPNPMAFRLAAEQGVKVLITVDTGISAVAEAKLAAEL
GMDYILTDHHEPGPQLPEALAIIHPKLEDSSYPFKELAGVGVAFKLAHALLGELPDDLLEIAAIGTIADLVPLQGENRVI
AAKGIEQLRLTRRPGLVALMKVANVQQEALNEESIGFAMAPRINAVGRLGDADPAVDLLMSASLEEAMELANEINDINKE
RQEMVAAMAEEAIAEVEENFPPESNGVLIIGREGWNAGVVGIVASKLVERFYRPTIVLSYDRDKGLAKGSARSIVGFDLF
QSLSQCREMLPHFGGHPMAAGMTLKIEDVQELRDRMNLIAKEELNEEDFTPITNLDGATTLAEVSVQTIQEMSLLAPFGV
ANPKPKILIDSVQLSSVRKIGANQNHLKVQLEDGEKHKLDGVGFGLGHFVDEIAPHAEVSVIGELSINEWNNMKKPQIFV
QDVSVDHWQLFDYRGKGQAEKWLADIPAQNRKIVIFSEDIYSRYPFLQNHPDLVHIENELDAEQLDCFEGHLVLMDMPPS
REYLKRVIAKKNPSRIYAHLSHEQDHFLSTMPTRDHFKWFYAFLAKKGPLDVKRYGDDLAKYRGWSRDTVDFISKVFFEL
DFVTIENGLIMLTTNAKKRDLSESESYTRKKEQFELEQELVYSSYQQLFDWFNHYLVHEATDLEEEIKQWI

Nucleotide


Download         Length: 2376 bp        

>NTDB_id=1006277 ABGM96_RS17180 WP_375563711.1 3565971..3568346(-) (recJ) [Peribacillus frigoritolerans strain C1141]
ATGTTAAAACCAAAAACCCGGTGGAACTTGCGAACTGCCGATGAAAACAAAGTTGCTGTACTAGCTGAAGAGCTTCATAT
CACACCTTTGGTTGCAGCCCTGCTTGTGAATCGAGGCCTGGATACGATTGAAAGTGCCCGATCGTTTTTATTTGTAAAAA
ATCAAACTTTTCATGACCCATTTTTATTGAAGGATATGGATAAAGCAGTATATAGAATAAAGGAAGCCATTCAAAATGGA
GAAAAAATACGTATATTCGGTGATTATGATGCGGATGGCGTGACATCGACCACAGTGATGATGACGGCGCTGACGAGATT
GGGGGCCGATGTTGATTTTTATATCCCTAATCGGTTTACAGAAGGATATGGTCCGAATCCGATGGCATTCCGCCTTGCAG
CCGAGCAAGGTGTGAAGGTATTAATAACCGTCGATACCGGAATCTCCGCAGTCGCTGAAGCGAAACTTGCCGCCGAGCTA
GGCATGGATTATATTTTGACTGACCACCATGAACCGGGACCGCAATTGCCTGAGGCATTGGCGATCATCCATCCTAAACT
GGAGGACAGTTCCTATCCATTTAAAGAACTTGCCGGAGTAGGAGTCGCATTTAAGCTTGCACACGCCTTGCTTGGGGAAT
TGCCTGATGATTTGCTAGAAATAGCGGCAATCGGGACGATAGCGGATTTAGTGCCTTTACAAGGGGAAAACCGCGTCATT
GCTGCGAAAGGCATCGAGCAGTTACGATTGACTCGCCGCCCGGGACTTGTTGCGTTAATGAAAGTGGCGAATGTTCAGCA
GGAAGCATTGAATGAAGAATCGATCGGATTTGCAATGGCACCGAGGATCAATGCTGTCGGGCGCCTTGGAGATGCCGATC
CCGCTGTTGATTTATTGATGTCCGCAAGTCTGGAAGAAGCAATGGAACTTGCTAATGAAATCAACGATATCAATAAAGAG
CGGCAGGAAATGGTTGCAGCAATGGCTGAGGAAGCGATTGCTGAAGTCGAGGAAAACTTCCCGCCGGAGTCCAATGGCGT
GCTCATCATCGGCAGGGAAGGCTGGAATGCCGGAGTTGTGGGGATTGTGGCCTCTAAACTTGTTGAACGCTTTTACCGGC
CGACGATTGTATTGAGCTATGATCGGGATAAGGGATTAGCTAAAGGTTCTGCTCGGAGCATCGTTGGTTTCGATCTTTTT
CAAAGTCTTTCCCAATGTCGTGAAATGCTGCCTCATTTCGGTGGACATCCCATGGCAGCTGGAATGACGTTGAAAATAGA
AGATGTTCAGGAGCTTAGGGACCGCATGAACTTGATTGCTAAGGAAGAACTGAACGAAGAGGACTTCACACCGATTACAA
ACTTGGACGGTGCTACGACTTTAGCTGAAGTTTCCGTTCAAACGATTCAGGAAATGAGCTTGCTTGCACCATTTGGGGTT
GCGAATCCCAAGCCAAAGATTTTGATAGATTCCGTACAACTTTCAAGTGTCCGCAAAATTGGTGCCAACCAAAATCACTT
GAAGGTTCAGCTGGAAGATGGTGAAAAACACAAACTTGACGGTGTGGGCTTCGGTCTCGGTCATTTTGTCGATGAAATAG
CTCCGCACGCTGAAGTTTCGGTGATTGGAGAGCTCTCCATCAATGAGTGGAATAATATGAAAAAGCCCCAGATCTTTGTC
CAGGATGTCTCGGTGGACCATTGGCAGTTATTCGATTACCGCGGCAAGGGACAGGCAGAGAAGTGGCTTGCCGACATTCC
TGCACAAAACCGGAAGATCGTCATTTTCTCGGAAGATATTTATAGCAGATATCCATTTTTGCAAAACCATCCAGATCTCG
TTCATATCGAGAATGAACTGGATGCTGAGCAGCTCGACTGCTTCGAAGGGCATTTGGTACTCATGGACATGCCGCCGTCC
AGGGAATATTTGAAACGGGTGATTGCCAAAAAGAACCCTTCCCGTATCTACGCTCACCTTTCCCATGAACAGGACCATTT
CTTAAGTACGATGCCGACAAGGGATCATTTTAAATGGTTTTATGCCTTCCTTGCCAAGAAGGGTCCGCTTGATGTGAAAA
GATATGGTGATGACCTGGCCAAATATCGCGGCTGGTCAAGAGATACAGTGGATTTCATTTCTAAGGTGTTTTTTGAGCTT
GATTTTGTTACAATAGAAAATGGGTTAATTATGCTCACAACCAATGCGAAAAAACGCGATCTCAGTGAATCTGAATCGTA
TACAAGAAAGAAAGAGCAATTTGAGCTTGAACAAGAGCTTGTTTATTCTTCCTATCAGCAATTATTCGATTGGTTCAATC
ATTATTTAGTTCATGAGGCAACAGACCTTGAGGAGGAAATAAAGCAATGGATTTAA

Domains

Predicted by InterproScan.

RecJ OB domain (RecJ_OB)

(456-562)

DHHA1 domain (DHHA1)

(310-437)

DHH family (DHH)

(82-226)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(569-772)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

55.076

99.621

0.549

Multiple sequence alignment