Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   ABGM96_RS16810 Genome accession   NZ_CP157360
Coordinates   3490119..3492524 (-) Length   801 a.a.
NCBI ID   WP_375563659.1    Uniprot ID   -
Organism   Peribacillus frigoritolerans strain C1141     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3485119..3497524
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABGM96_RS16785 - 3486614..3487690 (-) 1077 WP_072273253.1 AI-2E family transporter -
  ABGM96_RS16790 - 3487917..3488132 (-) 216 WP_034311361.1 hypothetical protein -
  ABGM96_RS16795 - 3488122..3488580 (-) 459 WP_048681252.1 PRC-barrel domain-containing protein -
  ABGM96_RS16800 - 3488718..3489470 (-) 753 WP_375563658.1 TPM domain-containing protein -
  ABGM96_RS16805 - 3489470..3490039 (-) 570 WP_372464783.1 LemA family protein -
  ABGM96_RS16810 recD2 3490119..3492524 (-) 2406 WP_375563659.1 ATP-dependent RecD-like DNA helicase Machinery gene
  ABGM96_RS16815 - 3492561..3493226 (-) 666 WP_264639079.1 tetratricopeptide repeat protein -
  ABGM96_RS16820 mnmA 3493348..3494463 (-) 1116 WP_048681267.1 tRNA 2-thiouridine(34) synthase MnmA -
  ABGM96_RS16825 - 3494493..3495638 (-) 1146 WP_375563660.1 cysteine desulfurase family protein -
  ABGM96_RS16830 cymR 3495699..3496118 (-) 420 WP_034308657.1 cysteine metabolism transcriptional regulator CymR -

Sequence

Protein


Download         Length: 801 a.a.        Molecular weight: 90588.32 Da        Isoelectric Point: 4.8233

>NTDB_id=1006276 ABGM96_RS16810 WP_375563659.1 3490119..3492524(-) (recD2) [Peribacillus frigoritolerans strain C1141]
MSQQDSLDLFSEEKKFMKGSHLVTIFHNEENMYSVVRIRVHETNLNYEEKEAVVTGYFPRMHEDEIYIFYGAMKEHPRFG
LQFHVEHFRKDLPQSKEGIVSYLSGDLFKGIGKKTAESIVETLGEKAISKILAQPSLLDDIPKLSGEKAKGLYDTLVEHQ
GLEQVMIALNQYGFGPQLSMKIYQMYKQDTITMVQGNPYKLVEDIEGIGFGRADELGHQLGISGSHPDRIKAACLYTLES
QCLQDGNIYIEAEQLLEAVKRLLEENKRDRIEFTNISSEIIELTQEGKIVVEDQRIYPPSLFYSEKGIVMNIKRLLAQTE
YEDQFPESEFLLALGELEERLDVSYAPAQKEAIQTALQSPMLILTGGPGTGKTTVIKGIVELYAELHGVSMDINDYKKEG
SDPFPFVLAAPTGRAAKRMAESTGLPAVTIHRLLGWNGSEGFSHDEDNQLDGRIVIIDEVSMVDTWLAHQLFKALPENVQ
VILVGDEDQLPSVGPGQVLKDLLASNCVPTVSLEHIYRQADGSSIIELAHEIKKGRLPDDVTKQQEDRSFIRCQTNQIPQ
VIEKVVANARTKGFTSKDIQVLAPMYRGPAGIDALNKMLQEVFNSNANEKRREIKFGDVIYRTGDKVLQLVNQPEEGVFN
GDMGEIVSILFAKENTDSVDKVIISFEGIEVTYTKQDLNQITHAYCCSIHKSQGSEFPIVILPVVKSYYRMLRRNLLYTA
ITRSKNFLILCGEEDAFRLGIERNDEMRRKTTLREKLREILSEEEMPVEKGEVHQEASYLDIFMHADPMIGMENVTPYDF
M

Nucleotide


Download         Length: 2406 bp        

>NTDB_id=1006276 ABGM96_RS16810 WP_375563659.1 3490119..3492524(-) (recD2) [Peribacillus frigoritolerans strain C1141]
TTGAGCCAGCAAGATTCGTTGGATTTGTTTTCAGAAGAGAAAAAGTTCATGAAAGGCAGTCATTTAGTGACGATCTTTCA
TAATGAAGAAAATATGTACTCGGTCGTGAGAATTCGTGTGCATGAAACGAATCTGAATTACGAAGAGAAGGAAGCGGTCG
TAACAGGTTATTTTCCAAGGATGCATGAGGATGAAATCTATATTTTTTATGGGGCCATGAAGGAACATCCGCGTTTTGGC
CTTCAATTCCATGTAGAGCATTTTCGCAAGGATCTGCCTCAATCCAAGGAAGGCATCGTCAGTTATTTATCAGGTGACCT
TTTCAAGGGCATTGGTAAAAAAACAGCCGAAAGCATTGTTGAGACACTGGGTGAAAAGGCCATTTCAAAAATTCTGGCTC
AGCCTTCGCTGCTTGACGATATCCCGAAGCTATCAGGGGAAAAGGCAAAGGGCCTCTATGATACATTGGTCGAGCATCAA
GGTCTGGAGCAGGTGATGATCGCCCTGAATCAATATGGCTTCGGTCCGCAGCTGTCGATGAAAATCTATCAAATGTATAA
GCAGGATACGATCACGATGGTTCAGGGTAATCCGTATAAGCTCGTAGAGGATATTGAAGGGATTGGGTTTGGACGGGCGG
ATGAGCTTGGGCATCAGCTGGGCATTTCCGGCAGCCACCCCGACCGAATCAAGGCTGCGTGCTTGTATACGCTTGAATCC
CAATGCCTCCAGGACGGAAATATCTACATAGAAGCCGAGCAGCTTTTGGAAGCGGTCAAACGGCTGCTGGAGGAAAATAA
ACGGGATCGCATTGAGTTCACCAACATTTCCTCGGAAATAATCGAATTGACGCAAGAGGGGAAAATCGTTGTCGAGGATC
AACGAATTTATCCGCCTTCGCTATTCTATTCGGAAAAGGGAATCGTGATGAACATCAAGCGGCTGCTTGCTCAAACCGAG
TATGAGGACCAGTTCCCCGAATCGGAGTTCTTGCTGGCACTTGGGGAGCTGGAAGAGCGGCTGGATGTTTCCTATGCCCC
GGCCCAAAAGGAAGCGATCCAGACAGCCCTGCAATCACCGATGTTAATTTTGACGGGGGGACCGGGTACCGGTAAGACGA
CAGTCATCAAAGGCATCGTTGAGCTATATGCAGAGCTGCATGGTGTATCCATGGACATTAACGATTATAAAAAAGAAGGA
AGCGATCCCTTTCCGTTCGTACTTGCGGCTCCAACTGGCCGTGCAGCGAAACGCATGGCCGAGTCGACGGGGCTCCCCGC
AGTTACGATCCACCGTTTACTGGGGTGGAACGGGAGTGAAGGCTTTTCCCATGATGAGGATAATCAGCTGGATGGCCGTA
TCGTGATCATCGATGAGGTTTCGATGGTGGATACGTGGCTGGCCCATCAATTGTTTAAAGCTCTGCCGGAAAATGTCCAA
GTGATATTGGTTGGTGATGAAGATCAGCTGCCATCTGTTGGCCCTGGGCAGGTTTTAAAGGATTTGCTTGCATCGAATTG
TGTACCGACTGTCAGTCTCGAACATATATATCGTCAAGCTGATGGTTCATCGATCATTGAATTGGCCCATGAAATCAAAA
AAGGAAGGCTTCCGGATGATGTTACGAAACAGCAGGAAGATCGATCGTTCATTCGCTGCCAAACCAATCAAATCCCCCAA
GTCATCGAGAAAGTGGTTGCCAATGCCAGGACGAAAGGCTTCACGTCCAAAGATATACAGGTGCTGGCTCCCATGTATCG
AGGGCCTGCCGGAATTGATGCACTGAATAAAATGCTTCAGGAAGTGTTCAATAGCAATGCGAATGAAAAGCGGCGGGAAA
TAAAATTCGGAGATGTGATATATAGAACCGGAGATAAGGTGCTTCAACTGGTGAACCAGCCAGAGGAAGGTGTCTTTAAT
GGCGATATGGGGGAAATCGTGTCCATATTGTTCGCTAAAGAAAATACCGATTCTGTCGATAAAGTGATCATATCGTTCGA
AGGCATCGAAGTGACTTACACGAAGCAGGATTTGAACCAGATTACACATGCCTATTGCTGCTCCATCCATAAGTCGCAGG
GAAGCGAATTCCCGATTGTCATTTTACCTGTAGTGAAAAGTTATTACCGGATGCTCCGTCGTAATTTATTGTATACGGCG
ATTACCCGCAGTAAAAATTTCTTGATCCTATGTGGTGAAGAAGATGCATTCCGTTTAGGGATCGAGCGTAATGATGAGAT
GCGCCGGAAAACGACTTTGCGTGAAAAGCTGCGGGAGATATTGAGTGAAGAAGAAATGCCGGTTGAAAAGGGAGAGGTGC
ATCAAGAGGCAAGTTATCTTGATATTTTTATGCATGCTGACCCGATGATCGGGATGGAGAATGTCACGCCATATGACTTT
ATGTAG

Domains

Predicted by InterproScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(595-666)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(683-731)

Helix-hairpin-helix containing domain (HHH_RecD2)

(158-249)

AAA domain (AAA_30)

(345-555)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

62.422

100

0.624

Multiple sequence alignment