Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   FGL22_RS01185 Genome accession   NZ_LR594048
Coordinates   205901..207190 (-) Length   429 a.a.
NCBI ID   WP_003061267.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. equisimilis strain NCTC11556     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 200901..212190
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL22_RS01150 (NCTC11556_00234) - 201094..202446 (+) 1353 WP_046177646.1 phage tail tip lysozyme -
  FGL22_RS01155 (NCTC11556_00235) - 202446..203000 (+) 555 WP_037589990.1 hypothetical protein -
  FGL22_RS01160 (NCTC11556_00236) - 203025..203786 (+) 762 WP_003060095.1 LPXTG cell wall anchor domain-containing protein -
  FGL22_RS01165 (NCTC11556_00237) - 203965..204291 (+) 327 WP_046177643.1 DUF771 domain-containing protein -
  FGL22_RS01170 (NCTC11556_00238) - 204341..205462 (+) 1122 WP_003061269.1 site-specific integrase -
  FGL22_RS01185 (NCTC11556_00241) rarA 205901..207190 (-) 1290 WP_003061267.1 replication-associated recombination protein A Machinery gene
  FGL22_RS01190 (NCTC11556_00242) - 207223..207789 (-) 567 WP_003060462.1 aminodeoxychorismate/anthranilate synthase component II -
  FGL22_RS01195 (NCTC11556_00243) pabB 207822..209579 (-) 1758 WP_065355431.1 aminodeoxychorismate synthase component I -
  FGL22_RS01200 (NCTC11556_00244) - 209764..211737 (-) 1974 WP_015057239.1 amidase family protein -

Sequence

Protein


Download         Length: 429 a.a.        Molecular weight: 47312.08 Da        Isoelectric Point: 7.3659

>NTDB_id=1005950 FGL22_RS01185 WP_003061267.1 205901..207190(-) (rarA) [Streptococcus dysgalactiae subsp. equisimilis strain NCTC11556]
MPDHLALRMRPKTISEVIGQEHLVGEGKIIRRMVEANMLSSMILYGPPGIGKTSIASAIAGTTRYAFRTFNATIDSKKRL
QEIAEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLENGTIIMIGATTENPFFSVTPAIRSRVQIFELEPLSNEDIKRALR
TAITDKERGFAFDVMLDDNALDFIATATNGDLRSAYHSLDLAVMSTKPDSDGKRHITLDTVENSLQRSYITMDKDGDGHY
DVLSALQKAIRGSDVNASLHYAARLVEAGDLPSLARRLIVIAYEDIGLANPDAQVHTVTALDAAQKIGFPEARILIANVV
IDLALSPKSNSAYLAMDAALSDLRTSGNLPIPRHLRDGHYAGSKELGNAKDYLYPHAYPKKWVKQQYLPDKLIGKQYFSP
NETGKYERALGANKERIDKLSSHSTGIPK

Nucleotide


Download         Length: 1290 bp        

>NTDB_id=1005950 FGL22_RS01185 WP_003061267.1 205901..207190(-) (rarA) [Streptococcus dysgalactiae subsp. equisimilis strain NCTC11556]
ATGCCCGATCATTTAGCGCTCCGCATGCGCCCCAAAACCATTTCAGAGGTCATCGGACAAGAACATCTTGTTGGAGAAGG
TAAAATCATCCGTCGCATGGTGGAAGCCAATATGCTATCGTCCATGATTCTCTATGGCCCTCCAGGAATCGGTAAAACTT
CCATTGCTTCTGCTATTGCTGGTACTACTAGATATGCCTTTCGGACCTTTAATGCCACCATTGACAGCAAAAAACGTCTT
CAAGAAATTGCTGAGGAGGCCAAATTTTCAGGAGGATTGGTATTGCTACTAGACGAGATTCATCGGCTAGACAAAACCAA
ACAAGACTTCCTGCTCCCCTTACTGGAAAATGGTACCATTATCATGATTGGCGCAACCACTGAGAATCCCTTCTTTTCAG
TGACACCAGCTATCAGAAGCAGGGTCCAAATTTTTGAACTGGAACCTCTCTCCAACGAGGATATCAAGCGTGCCCTTCGA
ACTGCCATTACCGATAAAGAAAGAGGCTTTGCCTTTGACGTGATGCTTGACGATAATGCTCTTGATTTTATCGCAACAGC
CACCAATGGCGATTTACGCTCAGCCTATCACTCCTTGGATCTAGCAGTCATGTCTACAAAGCCAGATAGCGATGGGAAGC
GACACATCACCTTAGACACTGTTGAAAATTCCTTGCAGCGCAGCTATATTACCATGGATAAAGATGGCGACGGGCATTAT
GATGTCCTATCTGCCCTCCAAAAAGCTATTCGTGGTTCCGATGTCAATGCCAGTCTTCACTATGCGGCACGATTAGTGGA
AGCAGGCGATTTACCAAGCCTAGCTAGGCGGTTGATTGTGATTGCTTATGAAGATATTGGTTTGGCTAATCCTGACGCCC
AAGTCCATACCGTTACCGCACTTGATGCCGCTCAGAAAATCGGCTTTCCAGAAGCACGTATTCTAATTGCTAACGTGGTC
ATTGATTTGGCCTTATCCCCAAAATCCAACTCAGCTTATCTGGCCATGGATGCTGCCTTAAGCGATTTGAGAACATCAGG
AAACCTTCCTATTCCAAGGCATTTGAGAGATGGGCATTATGCTGGCAGTAAAGAACTGGGGAATGCCAAAGATTACCTTT
ACCCCCACGCTTACCCTAAAAAATGGGTCAAACAACAGTACCTGCCAGATAAATTAATCGGTAAACAGTATTTTTCCCCA
AACGAAACAGGAAAATATGAACGCGCCCTGGGTGCCAACAAAGAGCGTATTGACAAGCTTTCTAGTCACTCAACCGGTAT
CCCAAAGTAG

Domains

Predicted by InterProScan.

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)

AAA C-terminal domain (AAA_assoc_2)

(174-251)

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-415)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

60.911

97.203

0.592