Detailed information NTG0100593

Bioinformatically predicted

Overview

• Name: comYH
• Type: Machinery gene
• Locus tag: QUD44_RS08650
• Genome accession: NZ_AP027275
• Coordinates: 1735030..1735965 (-)
• Length: 311 a.a.
• NCBI ID: WP_286210738.1
• Uniprot ID: -
• Organism: Lactococcus formosensis strain MS200408A
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1730030..1740965

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QUD44_RS08625 (LFMS200408A_17230)	-	1730078..1730938 (-)	861	WP_096369055.1	S1 RNA-binding domain-containing protein	-
QUD44_RS08630 (LFMS200408A_17240)	frr	1731048..1731605 (-)	558	WP_017368646.1	ribosome recycling factor	-
QUD44_RS08635 (LFMS200408A_17250)	pyrH	1731634..1732350 (-)	717	WP_019292238.1	UMP kinase	-
QUD44_RS08640 (LFMS200408A_17260)	-	1732441..1733634 (-)	1194	WP_096369054.1	acetate kinase	-
QUD44_RS08645 (LFMS200408A_17270)	-	1733752..1734945 (-)	1194	WP_096369053.1	acetate kinase	-
QUD44_RS08650 (LFMS200408A_17280)	comYH	1735030..1735965 (-)	936	WP_286210738.1	class I SAM-dependent methyltransferase	Machinery gene
QUD44_RS08655 (LFMS200408A_17290)	-	1736011..1736241 (-)	231	WP_017368651.1	DUF3165 family protein	-
QUD44_RS08660 (LFMS200408A_17300)	typA	1736316..1738157 (-)	1842	WP_017368652.1	translational GTPase TypA	-
QUD44_RS08665 (LFMS200408A_17310)	-	1738477..1738689 (+)	213	WP_003133311.1	YqgQ family protein	-
QUD44_RS08670 (LFMS200408A_17320)	-	1738682..1739650 (+)	969	WP_017368653.1	ROK family glucokinase	-
QUD44_RS08675 (LFMS200408A_17330)	-	1739667..1740047 (+)	381	WP_017368654.1	rhodanese-like domain-containing protein	-
QUD44_RS08680 (LFMS200408A_17340)	-	1740087..1740533 (-)	447	WP_096369051.1	Dps family protein	-
QUD44_RS08685	-	1740644..1740799 (+)	156	WP_231951089.1	prepilin peptidase	-

Sequence

Protein

• Length: 311 a.a.
• Molecular weight: 34951.89 Da
• Isoelectric Point: 4.5506

>NTDB_id=100593 QUD44_RS08650 WP_286210738.1 1735030..1735965(-) (comYH) [Lactococcus formosensis strain MS200408A]
MDIEKIEKAFGLVLENIMTIQAELMTDFYDAFVEQNAAYLGALELASLTKENNDKVRSMNLTKSEWQKLFQFVLLQGSRI
APMQGNHNLTPDSIGFIFNFIIEELHKDRSIRVLEFGSGTGNLAETLLVHLQKEVDYVGFEVDDLLLDLSASMSEVMGTE
ASFLQMDAVKPQPLEAVDVALSDLPVGYYPDDEAASHFQVHDKSEHSYVHHLMIEQSFKYLKESGFALFLAPDNLLTSAQ
SEFLKAWIKEHAHIAAVITLPSSLFKGAGKSIYLLSKNQTNTPTFVYPLSDLADRSILQEFMSEFVKNVKI

Nucleotide

• Length: 936 bp

>NTDB_id=100593 QUD44_RS08650 WP_286210738.1 1735030..1735965(-) (comYH) [Lactococcus formosensis strain MS200408A]
ATGGATATAGAGAAAATCGAAAAAGCTTTTGGGTTGGTCCTTGAGAATATCATGACAATTCAAGCAGAGCTGATGACGGA
TTTTTATGATGCTTTTGTGGAACAAAATGCAGCTTACTTAGGCGCCTTAGAGCTGGCGTCACTGACGAAGGAAAATAACG
ATAAAGTTCGTTCAATGAATCTTACGAAAAGTGAATGGCAAAAACTGTTTCAGTTTGTCTTGTTACAAGGCTCTCGTATT
GCACCGATGCAAGGAAATCATAATTTAACACCGGACTCTATTGGTTTTATCTTTAATTTCATCATTGAAGAGTTGCACAA
GGACCGATCGATTCGCGTGTTAGAGTTTGGTTCAGGAACGGGGAATTTAGCGGAAACGCTCTTGGTTCATCTGCAAAAAG
AAGTAGACTATGTTGGTTTTGAAGTAGACGACCTCTTGTTGGATTTATCTGCTTCAATGTCAGAAGTCATGGGAACAGAA
GCAAGTTTTCTCCAAATGGATGCTGTTAAACCTCAGCCCTTGGAAGCTGTGGACGTTGCCCTAAGTGATCTCCCAGTTGG
TTATTATCCAGACGATGAAGCTGCTAGCCATTTTCAAGTACATGACAAATCAGAACATAGCTATGTGCACCACTTAATGA
TCGAGCAATCCTTCAAGTATTTGAAAGAGAGTGGCTTTGCACTTTTCTTAGCTCCAGATAATCTTTTGACAAGTGCACAG
TCAGAGTTTTTGAAGGCCTGGATTAAAGAACATGCACATATTGCTGCAGTCATTACATTACCTTCATCCCTCTTTAAAGG
GGCAGGAAAATCGATTTATTTATTAAGTAAAAACCAGACAAATACACCGACTTTTGTTTACCCCTTATCTGACTTAGCAG
ACCGCTCTATTTTGCAAGAATTTATGTCTGAGTTTGTGAAAAATGTCAAGATTTGA

Domains

Predicted by InterproScan.

• N-6 DNA Methylase (N6_Mtase) (199-290)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYH	Streptococcus mutans UA140	49.677	99.678	0.495
comYH	Streptococcus mutans UA159	49.355	99.678	0.492