Detailed information    

insolico Bioinformatically predicted

Overview


Name   comGE   Type   Machinery gene
Locus tag   FGL14_RS00710 Genome accession   NZ_LR594045
Coordinates   101636..101881 (+) Length   81 a.a.
NCBI ID   WP_003058569.1    Uniprot ID   A0ABU0A7C2
Organism   Streptococcus dysgalactiae subsp. equisimilis strain NCTC9413     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 96636..106881
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL14_RS00685 (NCTC9413_00141) - 98543..98908 (+) 366 WP_003055257.1 DUF1033 family protein -
  FGL14_RS00690 (NCTC9413_00142) comGA 98989..99930 (+) 942 WP_138083656.1 competence type IV pilus ATPase ComGA Machinery gene
  FGL14_RS00695 (NCTC9413_00143) comGB 99866..100897 (+) 1032 WP_138084099.1 competence type IV pilus assembly protein ComGB Machinery gene
  FGL14_RS00700 (NCTC9413_00144) comGC 100899..101225 (+) 327 WP_003055259.1 competence type IV pilus major pilin ComGC Machinery gene
  FGL14_RS00705 (NCTC9413_00145) comGD 101200..101628 (+) 429 WP_041788719.1 competence type IV pilus minor pilin ComGD Machinery gene
  FGL14_RS00710 (NCTC9413_00146) comGE 101636..101881 (+) 246 WP_003058569.1 competence type IV pilus minor pilin ComGE Machinery gene
  FGL14_RS00715 (NCTC9413_00147) comGF 101862..102302 (+) 441 WP_003061780.1 competence type IV pilus minor pilin ComGF Machinery gene
  FGL14_RS00720 (NCTC9413_00148) comGG 102331..102654 (+) 324 WP_227985720.1 competence type IV pilus minor pilin ComGG -
  FGL14_RS00725 (NCTC9413_00149) comGH 102717..103670 (+) 954 WP_138083657.1 class I SAM-dependent methyltransferase Machinery gene
  FGL14_RS00730 (NCTC9413_00150) - 103729..104925 (+) 1197 WP_138083658.1 acetate kinase -
  FGL14_RS00735 (NCTC9413_00151) - 105232..105438 (+) 207 WP_003058508.1 helix-turn-helix transcriptional regulator -
  FGL14_RS00740 (NCTC9413_00152) - 105541..106221 (+) 681 WP_138083659.1 type II CAAX endopeptidase family protein -
  FGL14_RS00745 (NCTC9413_00153) - 106239..106676 (+) 438 WP_012766452.1 hypothetical protein -

Sequence


Protein


Download         Length: 81 a.a.        Molecular weight: 9280.82 Da        Isoelectric Point: 9.6222

>NTDB_id=1005634 FGL14_RS00710 WP_003058569.1 101636..101881(+) (comGE) [Streptococcus dysgalactiae subsp. equisimilis strain NCTC9413]
MATGLLVAIVILVLTSLEQSQTRLTYYRSQQEKLNLALMAVQTGQASLNMNDYRLTVLRTEKTLIVRDQEGEVIRIEKKD
R

Nucleotide


Download         Length: 246 bp        

>NTDB_id=1005634 FGL14_RS00710 WP_003058569.1 101636..101881(+) (comGE) [Streptococcus dysgalactiae subsp. equisimilis strain NCTC9413]
ATGGCAACAGGACTCCTCGTAGCTATTGTCATACTGGTTCTAACAAGTTTGGAGCAAAGTCAGACAAGGTTGACATATTA
TCGCAGCCAACAAGAAAAGCTCAACCTAGCTCTGATGGCAGTACAAACTGGTCAAGCGTCTCTCAATATGAATGATTATC
GTCTGACGGTTTTACGCACAGAAAAAACACTTATCGTTAGGGATCAGGAAGGAGAAGTTATTAGAATTGAAAAAAAGGAC
AGGTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGE Streptococcus mutans UA140

41.772

97.531

0.407

  comGE Streptococcus mutans UA159

41.772

97.531

0.407


Multiple sequence alignment