Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   FGL05_RS04810 Genome accession   NZ_LR594044
Coordinates   978917..980653 (-) Length   578 a.a.
NCBI ID   WP_111712780.1    Uniprot ID   -
Organism   Streptococcus lutetiensis strain NCTC8796     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 973917..985653
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL05_RS04790 (NCTC8796_01024) - 974298..975302 (-) 1005 WP_058813893.1 alpha-ketoacid dehydrogenase subunit beta -
  FGL05_RS04795 (NCTC8796_01025) - 975333..976298 (-) 966 WP_111712782.1 thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha -
  FGL05_RS04800 (NCTC8796_01026) - 976668..977267 (+) 600 WP_230318103.1 VTT domain-containing protein -
  FGL05_RS04805 (NCTC8796_01027) - 977383..978840 (+) 1458 WP_058813890.1 alpha-amylase -
  FGL05_RS04810 (NCTC8796_01028) rcrQ 978917..980653 (-) 1737 WP_111712780.1 ABC transporter ATP-binding protein Regulator
  FGL05_RS04815 (NCTC8796_01029) - 980657..982381 (-) 1725 WP_058813888.1 ABC transporter ATP-binding protein -
  FGL05_RS04820 (NCTC8796_01030) - 982427..983029 (-) 603 WP_020916677.1 lysozyme family protein -
  FGL05_RS04825 (NCTC8796_01031) - 983029..984006 (-) 978 WP_058813886.1 nucleoid-associated protein -
  FGL05_RS04830 (NCTC8796_01032) glyA 984050..985300 (-) 1251 WP_058813885.1 serine hydroxymethyltransferase -

Sequence

Protein


Download         Length: 578 a.a.        Molecular weight: 64349.76 Da        Isoelectric Point: 5.5415

>NTDB_id=1005563 FGL05_RS04810 WP_111712780.1 978917..980653(-) (rcrQ) [Streptococcus lutetiensis strain NCTC8796]
MKARKQSDTICRLFKELLSQKGLVIGATLGTIAQVALTVYLPVLIGNAVDVVLSPKSLTLIIPIITKMVIVIALNTLVQW
LNPLIYNRLIFCYIYDLRQRVMAKLNQMPISYLDKKSSGDLVSRVTTDAEQLSNGLLMVFNQFFIGVLTIIITIVTMADI
DLLMLGLVLILTPLSLFLARFIANKSYHLYQKQTKSRGRKTQYIEEMIRQESLLHVFNAQEAAIDTFTEINDTYADYSQG
AIFYSSTVNPSTRFINSLIYALLAGVGALRIMSGAFTVGQLTTFLNYVTQYTKPFNDISSVLSELQGAIACVERLYDILD
EEYEPLPVKAQLDADKIQGQIEFKDVSFGYTPQKTLINHLNLSITAASKVAIVGPTGAGKSTLINLLMRFYEVDKGAIYL
DGVSMADYSVEELRQQIGMVLQETWLKVGTIHDNIAYGNPEATREEVIAAAKAANADFFIRQLPNGYDTYLSDAGASLSQ
GQRQLLTIARIFVKLPKILILDEATSSIDTRTEILVQEAFEKLMKDRTSFIIAHRLSTIQSADCILVMVDGDIVEYGTHD
ELMTKQGVYYQMQTAQAG

Nucleotide


Download         Length: 1737 bp        

>NTDB_id=1005563 FGL05_RS04810 WP_111712780.1 978917..980653(-) (rcrQ) [Streptococcus lutetiensis strain NCTC8796]
ATGAAAGCAAGAAAACAATCTGATACAATCTGTCGTTTGTTTAAAGAGCTTCTTTCTCAAAAAGGACTTGTGATTGGAGC
GACTCTTGGAACAATTGCCCAAGTTGCTCTAACGGTTTACCTTCCTGTCCTTATTGGTAATGCTGTTGATGTGGTGTTAT
CACCAAAATCATTGACCTTGATTATTCCGATTATCACGAAAATGGTGATTGTCATTGCTCTAAATACCTTGGTTCAATGG
TTAAATCCTTTGATTTACAATCGTTTGATCTTTTGTTATATTTATGATTTACGTCAAAGAGTTATGGCAAAATTGAACCA
AATGCCGATTTCTTATCTGGATAAGAAAAGCTCTGGTGATTTGGTTAGTCGTGTCACAACTGATGCTGAGCAGCTAAGTA
ATGGTCTTTTGATGGTCTTCAACCAATTTTTCATTGGGGTTTTGACAATTATCATTACTATTGTGACAATGGCTGACATT
GATTTGTTGATGCTTGGTTTGGTGCTTATTTTGACACCTTTATCTCTTTTCCTAGCACGCTTTATTGCTAATAAGAGTTA
TCATTTGTATCAAAAACAAACCAAATCTCGTGGTCGCAAAACGCAGTACATAGAAGAGATGATTCGTCAAGAAAGTCTTT
TGCATGTCTTTAATGCACAAGAAGCAGCGATTGATACTTTCACAGAAATCAATGATACTTATGCGGATTATTCGCAAGGT
GCCATCTTCTATTCATCAACGGTTAACCCATCAACGCGCTTTATCAATAGTTTGATTTACGCTTTGCTTGCAGGTGTCGG
GGCTCTTCGTATCATGTCAGGTGCCTTTACCGTTGGTCAATTGACAACTTTCTTGAATTACGTTACTCAATATACCAAAC
CATTTAATGATATTTCATCAGTCTTGTCTGAATTGCAAGGTGCCATTGCCTGTGTGGAACGTCTTTACGATATTTTAGAT
GAAGAATACGAGCCGCTTCCAGTAAAAGCGCAGCTTGATGCTGATAAGATTCAAGGACAAATTGAATTTAAAGATGTGTC
ATTTGGTTACACACCACAGAAAACTTTGATTAATCATTTGAATCTTTCGATTACAGCCGCTTCAAAAGTTGCCATCGTCG
GGCCAACTGGTGCTGGTAAATCAACCTTGATTAATCTTTTGATGCGCTTCTACGAAGTTGATAAGGGTGCGATTTACCTT
GATGGCGTGTCAATGGCTGATTACTCGGTTGAAGAGCTACGCCAACAAATCGGTATGGTTCTGCAAGAGACTTGGTTAAA
AGTCGGAACAATCCACGATAACATTGCTTATGGGAATCCAGAGGCTACTCGTGAGGAAGTTATTGCAGCAGCAAAAGCAG
CTAACGCAGATTTCTTCATTCGTCAGTTGCCAAATGGTTATGACACTTACTTGTCTGATGCGGGAGCGTCATTATCACAA
GGACAACGTCAGCTTTTGACTATCGCTCGTATTTTTGTGAAATTACCAAAAATCTTGATTTTGGACGAAGCGACATCATC
TATTGATACTCGTACAGAAATCCTTGTTCAAGAAGCCTTTGAAAAGTTGATGAAAGATCGTACAAGCTTTATCATCGCTC
ACCGTTTGTCAACGATTCAATCAGCCGACTGTATCTTAGTAATGGTTGATGGTGATATCGTAGAATACGGTACACATGAT
GAGTTAATGACAAAACAAGGTGTTTATTACCAAATGCAAACAGCACAAGCTGGATAG

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(25-294)

ABC transporter (ABC_tran)

(358-506)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

38.726

100

0.389

Multiple sequence alignment