Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   FGL05_RS01235 Genome accession   NZ_LR594044
Coordinates   247314..249776 (-) Length   820 a.a.
NCBI ID   WP_111712993.1    Uniprot ID   -
Organism   Streptococcus lutetiensis strain NCTC8796     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 242314..254776
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL05_RS01215 (NCTC8796_00259) - 242371..242808 (-) 438 WP_058814232.1 GNAT family N-acetyltransferase -
  FGL05_RS01220 (NCTC8796_00260) pflB 242869..245193 (-) 2325 WP_111712995.1 formate C-acetyltransferase -
  FGL05_RS01225 (NCTC8796_00261) dinB 245410..246501 (+) 1092 WP_111713091.1 DNA polymerase IV -
  FGL05_RS01230 (NCTC8796_00262) - 246558..247058 (-) 501 WP_111712994.1 hypothetical protein -
  FGL05_RS01235 (NCTC8796_00263) recD/recD2/recDB 247314..249776 (-) 2463 WP_111712993.1 ATP-dependent RecD-like DNA helicase Machinery gene
  FGL05_RS01240 (NCTC8796_00264) lepB 249888..250481 (-) 594 WP_111712992.1 signal peptidase I -
  FGL05_RS01245 (NCTC8796_00265) rnhC 250498..251397 (-) 900 WP_111712991.1 ribonuclease HIII -
  FGL05_RS01250 (NCTC8796_00266) zapA 251517..251825 (+) 309 WP_020917442.1 cell division protein ZapA -
  FGL05_RS01255 (NCTC8796_00267) - 251829..252377 (+) 549 WP_058814226.1 CvpA family protein -

Sequence

Protein


Download         Length: 820 a.a.        Molecular weight: 91948.92 Da        Isoelectric Point: 4.4293

>NTDB_id=1005529 FGL05_RS01235 WP_111712993.1 247314..249776(-) (recD/recD2/recDB) [Streptococcus lutetiensis strain NCTC8796]
MEYFFSGTIDRIIFENASNFFKIILLEIADTDSDFDDFEIIVTGTIADVIEGENYTFWGELTQHPKYGEQLKVTRYERTK
PTSSGLIKYFSSDHFKGIGKKTAEKIVQLYGDDTIDKILEDPSKLDSISGLSKENRDNFVAKLKLNYGTEQILSKLAEYG
LTNRVAIDIFNHCKEESLEIIQENPYQLVEDIQGIGFKIADQLAEQLGIEADAPQRFRAALVHSLFETSVENGDTYVEAR
DLLENAITILEEARQIELDAAAVAKELSTLIAEDKVQNIGTKIFDNTLFYAEAGIKKNLTRILDTPLTKQFSDQDLQEEI
EDIENTFGISYDAVQKNAIKEALQSKVFILTGGPGTGKTTVINGLIAAYADLHGIDLEKKDIPIVLAAPTGRAARRMNEL
TGLPSATIHRHLGLNGDNDYQAMDDYLDCDLIIIDEFSMVDTWLANQLFSSISSNTQVIIVGDSDQLPSVGPGQVLADLL
KIKTLPQIALTKIFRQSEESTIVTLANQMRQGILPADFTQKKADRSYFEAGAQYIPEMIPKIVSAAIKSGINPQEIQILA
PMYRGAAGINHLNTIIQDLLNPLGDQLSFAFGDMNFRKGDKVLHLINDAELNVFNGDIGYITDLISAKYTESKQDELYMS
FDGTEVIYPRNEWHKITLAYAMSIHKSQGSEFQVVILPITRQSRRLLQRNLIYTAITRSKSKLVMLGEIAAFDYAIKNEG
SKRKTYLVQRFTANPEGLDNSEAIENPDEAKESQNEPNKACSSTAHVEEEKSDKDVQLILDFDEDKPDNVKEYRLTEENL
PFIDPMIGITQEDIEQFFKK

Nucleotide


Download         Length: 2463 bp        

>NTDB_id=1005529 FGL05_RS01235 WP_111712993.1 247314..249776(-) (recD/recD2/recDB) [Streptococcus lutetiensis strain NCTC8796]
ATGGAATACTTCTTTTCTGGCACTATTGACCGTATTATTTTTGAAAATGCCAGTAACTTCTTTAAAATCATATTACTCGA
AATCGCAGATACCGATTCTGACTTTGATGATTTTGAGATCATTGTCACAGGAACCATCGCTGATGTCATCGAAGGCGAAA
ACTACACCTTCTGGGGAGAATTAACCCAGCATCCAAAATATGGTGAACAGCTCAAAGTAACCCGATACGAGCGAACAAAA
CCAACATCTTCTGGACTCATCAAGTACTTTTCAAGTGACCACTTTAAAGGCATCGGTAAAAAGACAGCTGAAAAAATCGT
CCAACTCTATGGTGATGATACAATTGATAAAATTCTAGAAGACCCTAGTAAGCTTGATAGTATTTCTGGACTCTCTAAAG
AAAATCGTGACAATTTTGTTGCCAAATTAAAACTCAACTACGGTACTGAACAAATTCTCTCAAAGCTCGCTGAATACGGC
TTAACTAATCGCGTAGCCATTGACATTTTCAATCATTGTAAGGAAGAAAGTTTAGAGATTATCCAAGAAAATCCTTATCA
ACTGGTCGAAGATATTCAAGGTATCGGCTTTAAAATTGCGGACCAGCTCGCCGAACAATTGGGCATTGAGGCCGATGCAC
CGCAGCGTTTTCGTGCCGCACTCGTTCACAGCTTATTTGAAACCTCGGTTGAAAATGGGGATACTTACGTTGAGGCGCGT
GATTTACTAGAAAATGCTATTACCATTTTGGAAGAAGCCCGCCAAATTGAGCTAGATGCTGCTGCCGTCGCTAAGGAATT
ATCAACACTTATCGCTGAAGACAAGGTGCAAAACATCGGTACAAAAATCTTTGATAATACACTGTTTTATGCCGAAGCTG
GTATCAAGAAAAATCTAACACGTATCCTTGACACTCCACTAACTAAACAGTTTTCAGATCAAGACTTACAAGAAGAAATT
GAAGACATCGAAAACACCTTTGGCATTTCTTATGATGCTGTCCAAAAAAATGCCATTAAAGAAGCGCTTCAAAGCAAAGT
TTTCATTCTAACTGGTGGACCAGGAACTGGTAAAACAACCGTTATTAACGGTCTGATTGCTGCTTATGCTGATTTACATG
GCATTGATTTAGAGAAAAAGGATATCCCAATTGTTCTTGCTGCGCCAACTGGCCGCGCGGCACGTCGTATGAACGAATTA
ACCGGCCTTCCAAGTGCAACCATTCACCGCCATCTTGGTTTAAATGGCGACAATGACTATCAAGCCATGGATGATTATTT
GGACTGTGATTTGATTATCATCGATGAATTTTCAATGGTAGATACTTGGCTAGCTAATCAGCTCTTTAGCTCCATTTCAT
CAAATACCCAAGTCATTATCGTTGGGGATAGTGACCAACTTCCATCCGTTGGGCCTGGGCAAGTGCTAGCTGATTTACTC
AAAATCAAAACACTGCCACAAATAGCACTCACAAAAATCTTTAGGCAATCTGAAGAATCGACCATTGTCACACTGGCTAA
TCAGATGAGGCAAGGTATCTTGCCAGCTGATTTTACCCAGAAAAAAGCTGACCGTTCTTACTTTGAAGCTGGTGCTCAGT
ATATTCCTGAGATGATTCCAAAAATCGTCAGCGCAGCTATTAAAAGTGGCATCAACCCTCAAGAAATTCAAATTCTAGCG
CCTATGTACCGTGGCGCTGCTGGTATTAACCACCTCAATACAATCATTCAAGATTTGCTTAATCCGCTCGGTGACCAATT
ATCATTTGCCTTTGGTGATATGAATTTCCGTAAAGGGGACAAAGTTCTTCATTTAATTAATGATGCCGAGCTCAATGTCT
TTAATGGAGATATTGGCTATATCACAGACTTGATTTCAGCCAAATACACAGAATCAAAACAAGATGAACTCTACATGTCT
TTTGACGGGACTGAAGTGATTTACCCTCGTAACGAATGGCACAAAATTACGCTTGCCTATGCTATGTCCATTCACAAATC
ACAAGGGAGCGAATTCCAAGTAGTTATTCTGCCAATCACGCGCCAAAGTCGTCGTCTTCTACAACGCAATCTGATTTACA
CAGCCATTACCCGCTCTAAAAGCAAATTGGTTATGTTGGGAGAAATTGCTGCCTTTGATTACGCCATAAAAAATGAAGGC
TCTAAACGCAAGACTTATCTCGTCCAACGCTTCACAGCAAATCCAGAAGGCCTTGACAACTCAGAAGCGATAGAAAATCC
AGACGAGGCAAAAGAGAGCCAAAATGAGCCAAATAAAGCATGTTCTTCCACTGCTCACGTTGAAGAAGAAAAATCCGACA
AGGATGTTCAACTTATCCTTGATTTTGACGAAGACAAACCAGATAACGTCAAAGAATACCGACTAACAGAAGAAAATCTT
CCATTCATCGATCCAATGATCGGTATCACTCAAGAAGATATCGAACAATTTTTCAAAAAATAA

Domains

Predicted by InterProScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(659-705)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(572-638)

AAA domain (AAA_30)

(331-524)

Helix-hairpin-helix containing domain (HHH_RecD2)

(147-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

43.197

92.317

0.399

Multiple sequence alignment