Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   ABI138_RS09865 Genome accession   NZ_CP157286
Coordinates   2118229..2120040 (-) Length   603 a.a.
NCBI ID   WP_348583422.1    Uniprot ID   -
Organism   Faecalibacterium prausnitzii strain 3     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2113229..2125040
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABI138_RS09850 (ABI138_09850) - 2113780..2114700 (-) 921 WP_348583419.1 MoxR family ATPase -
  ABI138_RS09855 (ABI138_09855) - 2114902..2116932 (-) 2031 WP_348583420.1 FAD-binding protein -
  ABI138_RS09860 (ABI138_09860) - 2117105..2118028 (+) 924 WP_348583421.1 LysR family transcriptional regulator -
  ABI138_RS09865 (ABI138_09865) rcrQ 2118229..2120040 (-) 1812 WP_348583422.1 ABC transporter ATP-binding protein Regulator
  ABI138_RS09870 (ABI138_09870) - 2120042..2122348 (-) 2307 WP_348583423.1 ABC transporter ATP-binding protein -
  ABI138_RS09875 (ABI138_09875) - 2122345..2122851 (-) 507 WP_348583424.1 MarR family transcriptional regulator -
  ABI138_RS09880 (ABI138_09880) - 2123054..2124049 (+) 996 WP_348583425.1 Na/Pi symporter -

Sequence

Protein


Download         Length: 603 a.a.        Molecular weight: 66835.18 Da        Isoelectric Point: 6.6208

>NTDB_id=1005415 ABI138_RS09865 WP_348583422.1 2118229..2120040(-) (rcrQ) [Faecalibacterium prausnitzii strain 3]
MPRPGRMTTERAKDFKGTLLQLVRTLGRYRLSLVTAIVFAILSTIFNIAGPKVLAKATTALATGWIAKLRGTGSIDFVYI
GRILLFLLGMYLLSSAFSFIQGWLMTGLSQKVCYDFRRQISEKINRLPLAYFEKRTVGEVLSRITNDVDTLGQSLNQSIT
QLITSVTTMIGVLVMMLSISPKMTLIALLILPVSLVLVLIVVRFSQKYFKAQQAILGVVNGQVEEVYSGHNVVKAFNREA
VVLNDFNAANDKLYESAWKSQFLSGLMMPIMNFVGNLGYVAVAIVGSIFAANGTITIGDIQAFIQYVKNFTQPIQQLSQV
SNMLQSMAAAAERVFEFLNEPEEDQQADPARRADPACINGQVTFSHVRFGYTPDKTVIHDFSCEVKPGQKVAIVGPTGAG
KTTMVKLLMRFYDVDSGSITLNGHDVRDFDRSALREGFGMVLQDTWLFKGTIMENIRYGRLDATDEEVIAAAKAANADHF
IRTLPGGYQMELNEDASNVSQGQKQLLTIARTILADNRILILDEATSSVDTRTEQRIQTAMDRLMEGRTSFVIAHRLSTI
RDADLILVMRDGDIVEQGTHDQLIEAGGFYADLYNSQFEDVVE

Nucleotide


Download         Length: 1812 bp        

>NTDB_id=1005415 ABI138_RS09865 WP_348583422.1 2118229..2120040(-) (rcrQ) [Faecalibacterium prausnitzii strain 3]
ATGCCAAGACCCGGACGCATGACGACCGAACGCGCCAAGGACTTCAAGGGCACCCTGCTGCAGCTTGTGCGCACCCTTGG
CCGCTACCGCCTTTCGCTCGTTACCGCCATTGTATTTGCCATTCTTTCTACCATCTTCAACATTGCAGGCCCCAAGGTGC
TGGCAAAGGCCACCACGGCCCTTGCTACCGGCTGGATCGCCAAGCTGCGCGGCACCGGCAGCATCGACTTTGTGTATATC
GGCCGCATCCTGCTGTTTTTGCTGGGCATGTACCTGCTGAGCAGCGCATTCAGCTTTATTCAGGGCTGGCTGATGACCGG
TCTTTCGCAGAAGGTGTGCTACGATTTCCGCCGTCAGATCAGCGAAAAGATCAACCGCCTGCCCCTTGCCTACTTTGAAA
AGCGCACCGTGGGCGAGGTGCTGTCCCGCATCACCAACGATGTGGACACGCTGGGCCAGAGCCTGAACCAGAGCATCACC
CAGCTCATCACCAGCGTGACCACCATGATCGGCGTGCTGGTCATGATGCTGTCCATCAGCCCGAAGATGACCCTGATCGC
CCTGCTGATCCTGCCCGTCTCGCTGGTGCTCGTGCTCATCGTAGTTCGGTTCAGCCAGAAATACTTCAAGGCCCAGCAGG
CCATTCTGGGCGTCGTAAACGGTCAGGTGGAAGAAGTCTACTCCGGCCACAACGTGGTCAAAGCCTTCAACCGCGAGGCC
GTGGTGCTGAACGACTTCAACGCCGCCAACGACAAGCTGTATGAATCTGCGTGGAAAAGCCAGTTTCTCTCCGGCCTGAT
GATGCCCATTATGAACTTTGTGGGCAATCTGGGCTACGTGGCGGTGGCCATCGTGGGCAGCATTTTTGCGGCAAACGGCA
CCATTACCATCGGTGACATTCAGGCCTTCATCCAGTACGTCAAGAACTTCACCCAGCCCATCCAGCAGCTTTCTCAGGTA
TCCAACATGCTGCAGAGCATGGCCGCTGCCGCTGAGCGGGTGTTCGAGTTTTTGAACGAGCCGGAAGAGGACCAGCAGGC
AGACCCGGCCCGCCGCGCGGACCCTGCCTGCATCAACGGACAGGTGACATTCAGCCATGTCCGCTTCGGCTACACCCCGG
ACAAGACCGTCATCCACGATTTCAGCTGTGAGGTCAAGCCCGGCCAGAAGGTGGCCATCGTCGGCCCCACCGGCGCGGGC
AAAACTACCATGGTCAAGCTGCTCATGCGCTTCTATGATGTGGATTCCGGTTCCATCACCCTGAATGGCCACGATGTGCG
GGACTTTGACCGCAGCGCCCTGCGTGAGGGCTTCGGCATGGTGCTGCAGGACACATGGCTGTTCAAGGGCACCATCATGG
AGAACATCCGCTATGGCCGACTGGATGCCACCGATGAAGAAGTGATCGCCGCCGCCAAGGCTGCCAACGCCGACCACTTC
ATCCGCACCCTGCCCGGCGGCTACCAGATGGAGCTGAACGAGGACGCTTCCAACGTGAGTCAGGGCCAGAAGCAGCTGCT
CACCATCGCCCGCACCATTCTGGCCGACAATCGCATCCTGATTTTGGACGAGGCCACCAGCAGTGTGGATACCCGCACCG
AGCAGCGCATCCAGACCGCCATGGACCGCCTGATGGAGGGCCGCACCAGCTTTGTCATCGCCCACCGTCTTTCCACCATC
CGGGACGCCGACCTCATCCTTGTGATGCGAGATGGCGACATCGTGGAGCAGGGCACCCACGACCAGCTGATCGAAGCTGG
CGGCTTCTACGCCGACCTGTACAACAGCCAGTTCGAGGACGTGGTGGAGTAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(34-313)

ABC transporter (ABC_tran)

(379-527)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

50.937

97.347

0.496

Multiple sequence alignment