Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   FGL06_RS01050 Genome accession   NZ_LR594042
Coordinates   182822..184090 (-) Length   422 a.a.
NCBI ID   WP_039697697.1    Uniprot ID   -
Organism   Streptococcus equinus strain NCTC8133     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 177822..189090
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL06_RS01025 (NCTC8133_00204) - 178191..179222 (+) 1032 WP_126437557.1 aldose epimerase family protein -
  FGL06_RS01030 (NCTC8133_00205) - 179250..180209 (+) 960 WP_126437558.1 alpha/beta hydrolase -
  FGL06_RS01035 (NCTC8133_00206) - 180502..181929 (+) 1428 WP_126437559.1 isopeptide-forming domain-containing fimbrial protein -
  FGL06_RS01050 (NCTC8133_00209) rarA 182822..184090 (-) 1269 WP_039697697.1 replication-associated recombination protein A Machinery gene
  FGL06_RS01055 (NCTC8133_00210) - 184080..184574 (-) 495 WP_126437560.1 GNAT family N-acetyltransferase -
  FGL06_RS01060 (NCTC8133_00211) - 184639..185109 (+) 471 WP_074451006.1 DUF3013 family protein -
  FGL06_RS01065 (NCTC8133_00212) prmA 185389..186342 (+) 954 WP_021141531.1 50S ribosomal protein L11 methyltransferase -
  FGL06_RS01070 (NCTC8133_00213) - 186343..187083 (+) 741 WP_126437561.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  FGL06_RS01075 (NCTC8133_00214) - 187190..188203 (+) 1014 WP_126437562.1 LacI family DNA-binding transcriptional regulator -
  FGL06_RS01080 - 188196..188468 (+) 273 WP_126437563.1 hypothetical protein -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 46492.81 Da        Isoelectric Point: 6.5117

>NTDB_id=1005332 FGL06_RS01050 WP_039697697.1 182822..184090(-) (rarA) [Streptococcus equinus strain NCTC8133]
MPNNLALRMRPKNIDQVIGQKHLVGEGKIIRRMVEANMLSSMILYGPPGIGKTSIASAIAGATKYAFRTFNATTDSKKRL
QEIAEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLENGNIIMIGATTENPFFSVTPAIRSRVQIFELEPLSTDDIKSALQ
TALSDKERGFDFDVDIDADAIDFIATATNGDLRSAFNSLDLAVMSTKADENGLRHITLDTVENSLQRSYITMDKDGDGHY
DVLSALQKSIRGSDVNASLHYAARLIEAGDLPSLARRLTVIAYEDIGLANPDAQIHTVTALEAAQKIGFPEARILIANVV
IDLALSPKSNSAYEAIDKAIADLHQNGTLPIPRHLRDGHYAGSKELGNAQGYKYPHNYPEKWVKQQYLPDKLVGKNYFDA
NQTGKYERALGANKDRIDRLSK

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=1005332 FGL06_RS01050 WP_039697697.1 182822..184090(-) (rarA) [Streptococcus equinus strain NCTC8133]
ATGCCAAATAATCTCGCTTTACGGATGCGTCCCAAAAATATTGACCAAGTCATTGGGCAAAAGCATCTGGTAGGCGAAGG
AAAAATCATTCGCCGCATGGTCGAAGCCAATATGCTATCGTCCATGATTCTCTACGGTCCTCCCGGCATCGGGAAGACTT
CAATCGCTAGCGCTATCGCAGGAGCAACCAAGTACGCCTTTCGTACCTTTAACGCCACAACCGATAGCAAAAAGCGCCTG
CAAGAAATCGCCGAAGAAGCAAAATTCTCTGGTGGACTGGTTTTACTGCTCGATGAAATCCATCGTCTCGATAAAACCAA
ACAAGATTTTCTGCTACCATTGCTTGAAAACGGCAATATCATCATGATTGGAGCGACAACTGAAAATCCATTTTTCTCAG
TCACTCCTGCCATTCGTTCCCGCGTTCAAATTTTCGAACTTGAGCCACTCTCAACTGACGACATTAAGTCAGCTTTGCAA
ACTGCTCTTTCTGACAAAGAACGTGGATTTGACTTTGATGTCGACATCGATGCAGATGCCATTGATTTTATCGCGACAGC
AACCAATGGTGACCTTCGTTCTGCCTTTAATTCACTTGACTTAGCTGTTATGTCTACAAAAGCTGATGAAAATGGGCTTC
GCCACATCACGCTTGATACCGTTGAAAATAGCTTGCAGCGCAGCTATATTACCATGGATAAAGACGGAGACGGGCATTAT
GATGTTCTCTCAGCTCTTCAAAAATCTATTCGAGGTTCTGATGTCAATGCCAGCCTGCACTACGCGGCACGTTTGATTGA
AGCTGGTGATTTGCCAAGTCTTGCCAGAAGACTAACAGTCATTGCTTATGAAGACATCGGGCTTGCAAACCCTGATGCGC
AGATTCATACCGTCACTGCCCTTGAGGCTGCTCAAAAAATCGGCTTTCCGGAAGCCCGTATCTTGATTGCTAACGTCGTG
ATTGACCTTGCACTTTCACCAAAATCAAATTCAGCCTACGAAGCTATTGATAAGGCAATCGCTGATTTGCATCAAAATGG
AACCCTTCCTATTCCACGCCACCTCCGTGACGGACACTACGCTGGCAGCAAAGAATTAGGCAATGCCCAAGGCTACAAAT
ACCCTCACAACTATCCAGAAAAATGGGTGAAACAACAGTATCTCCCAGATAAACTGGTCGGAAAAAATTACTTTGACGCC
AACCAAACTGGTAAATACGAACGCGCCCTTGGTGCCAATAAAGACCGAATCGATCGTTTATCAAAATAA

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(173-251)

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-413)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

60.628

98.104

0.595