Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   PPECC33_RS18150 Genome accession   NZ_CP006632
Coordinates   3665057..3665524 (+) Length   155 a.a.
NCBI ID   WP_000340164.1    Uniprot ID   -
Organism   Escherichia coli PCN033     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3660057..3670524
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PPECC33_RS18100 (PPECC33_03631) rplP 3660167..3660577 (-) 411 WP_000941212.1 50S ribosomal protein L16 -
  PPECC33_RS18105 (PPECC33_03632) rpsC 3660590..3661291 (-) 702 WP_000529945.1 30S ribosomal protein S3 -
  PPECC33_RS18110 (PPECC33_03633) rplV 3661309..3661641 (-) 333 WP_000447529.1 50S ribosomal protein L22 -
  PPECC33_RS18115 (PPECC33_03634) rpsS 3661656..3661934 (-) 279 WP_001138117.1 30S ribosomal protein S19 -
  PPECC33_RS18120 (PPECC33_03635) rplB 3661951..3662772 (-) 822 WP_000301864.1 50S ribosomal protein L2 -
  PPECC33_RS18125 (PPECC33_03636) rplW 3662790..3663092 (-) 303 WP_000617544.1 50S ribosomal protein L23 -
  PPECC33_RS18130 (PPECC33_03637) rplD 3663089..3663694 (-) 606 WP_000424395.1 50S ribosomal protein L4 -
  PPECC33_RS18135 (PPECC33_03638) rplC 3663705..3664334 (-) 630 WP_000579833.1 50S ribosomal protein L3 -
  PPECC33_RS18140 (PPECC33_03639) rpsJ 3664367..3664678 (-) 312 WP_001181004.1 30S ribosomal protein S10 -
  PPECC33_RS18150 (PPECC33_03640) pilD 3665057..3665524 (+) 468 WP_000340164.1 A24 family peptidase Machinery gene
  PPECC33_RS18155 (PPECC33_03641) bfr 3665521..3665997 (-) 477 WP_000675515.1 bacterioferritin -
  PPECC33_RS18160 (PPECC33_03642) bfd 3666070..3666264 (-) 195 WP_000289090.1 bacterioferritin-associated ferredoxin -
  PPECC33_RS18165 (PPECC33_03643) tuf 3666447..3667631 (-) 1185 WP_000031783.1 elongation factor Tu -
  PPECC33_RS18170 (PPECC33_03644) fusA 3667702..3669816 (-) 2115 WP_000124703.1 elongation factor G -
  PPECC33_RS18175 (PPECC33_03645) rpsG 3669913..3670383 (-) 471 WP_001138043.1 30S ribosomal protein S7 -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 17028.22 Da        Isoelectric Point: 8.0236

>NTDB_id=100524 PPECC33_RS18150 WP_000340164.1 3665057..3665524(+) (pilD) [Escherichia coli PCN033]
MDATLPFLILYACLSVLLFFCDAKHGLLPDRFTCPLLWSGLLFYQVCYPDGLADALWGAIIGYGTFAVIYWGYRILRHKE
GLGYGDVKFLAALGAWHTWTFLPRLVFLAASFACGAVVIGLLMRGKESLKNPLPFGPFLAAAGFVVGWDSLLAGR

Nucleotide


Download         Length: 468 bp        

>NTDB_id=100524 PPECC33_RS18150 WP_000340164.1 3665057..3665524(+) (pilD) [Escherichia coli PCN033]
ATGGACGCTACCCTTCCCTTTCTGATTTTGTACGCTTGTTTATCTGTCCTACTTTTTTTCTGTGATGCAAAGCATGGCTT
GTTACCTGACAGATTTACCTGCCCGTTACTCTGGTCAGGTCTTTTGTTCTATCAGGTTTGTTATCCTGACGGTTTAGCCG
ATGCGTTATGGGGGGCGATTATTGGTTACGGCACATTCGCTGTCATTTACTGGGGGTATCGCATACTGCGTCATAAAGAA
GGATTAGGCTATGGTGATGTGAAGTTTCTCGCCGCCCTTGGTGCCTGGCATACATGGACCTTCTTGCCACGACTGGTTTT
CCTTGCTGCCTCATTCGCTTGCGGAGCCGTAGTTATTGGTCTGCTCATGAGAGGAAAAGAATCATTAAAAAACCCGCTGC
CGTTTGGGCCATTTCTGGCGGCTGCGGGTTTCGTTGTAGGCTGGGATAGTTTGCTGGCAGGCCGTTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(10-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

44.882

81.935

0.368

Multiple sequence alignment