Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   FGL12_RS01290 Genome accession   NZ_LR594041
Coordinates   266545..268911 (-) Length   788 a.a.
NCBI ID   WP_138101109.1    Uniprot ID   -
Organism   Streptococcus gordonii strain NCTC9124     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 261545..273911
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL12_RS01260 (NCTC9124_00250) - 262703..263029 (+) 327 WP_011999780.1 hypothetical protein -
  FGL12_RS01270 (NCTC9124_00251) - 263348..263731 (+) 384 Protein_246 CPBP family intramembrane glutamate endopeptidase -
  FGL12_RS01275 (NCTC9124_00252) - 263776..264525 (+) 750 WP_011999782.1 CPBP family intramembrane glutamic endopeptidase -
  FGL12_RS01280 (NCTC9124_00253) - 264601..265239 (+) 639 WP_011999783.1 TetR/AcrR family transcriptional regulator -
  FGL12_RS01285 (NCTC9124_00254) - 265544..266488 (-) 945 WP_011999784.1 hypothetical protein -
  FGL12_RS01290 (NCTC9124_00255) recD/recD2/recDB 266545..268911 (-) 2367 WP_138101109.1 ATP-dependent RecD-like DNA helicase Machinery gene
  FGL12_RS01295 (NCTC9124_00256) lepB 269006..269608 (-) 603 WP_011999786.1 signal peptidase I -
  FGL12_RS01300 (NCTC9124_00257) rnhC 269612..270502 (-) 891 WP_011999787.1 ribonuclease HIII -
  FGL12_RS01305 (NCTC9124_00258) - 270652..270957 (+) 306 WP_008808274.1 hypothetical protein -
  FGL12_RS01310 (NCTC9124_00259) - 270957..271505 (+) 549 WP_041789851.1 CvpA family protein -
  FGL12_RS01315 (NCTC9124_00260) mutS/mutS2 271561..273894 (+) 2334 WP_138101110.1 endonuclease MutS2 Machinery gene

Sequence

Protein


Download         Length: 788 a.a.        Molecular weight: 88533.82 Da        Isoelectric Point: 4.6596

>NTDB_id=1005211 FGL12_RS01290 WP_138101109.1 266545..268911(-) (recD/recD2/recDB) [Streptococcus gordonii strain NCTC9124]
MEFYFSGTVERIIFENPNNFFRILLLDIEDTDAEFDDFEIIVTGTMADIMEGQDYTFWGTLVQHPKYGEQLKVTRYERAK
PTSKGLVKYFASDHFKGIGVKTAQKIIDLYGDNTIDQILADPSRLVSINGLSAVNRVAFVSKLRQNYGTEMLLSKLAEYG
IPNKLALQIQDTYKEETLEIVQKYPYQLVEEIQGIGFKIADQLAQQLGIESDAPERFRAGLVHTLFSQSMETGDTYIEAR
DLLAHTIDLLENARQVELDPALVADELAHLIEEDKIQNVDTKIFENSLYFAEEGIRSNLIRILEKGKKETFGAPKLESII
EQVEQDLGICYDHIQKKAICDAINHKVFILTGGPGTGKTTVINGIIATYATLHKLDLAKKQELPILLAAPTGRAARRMNE
LTGLPSATIHRHLGMTGDDDTSHLDDYLDADFIIVDEFSMVDTWLANQLLSNISSNSKILIVGDADQLPSVSPGQVLADL
LKIRLLPQTKLTKIYRQGEDSTIVTLASQIQQGLLPANFTEKKADRSYFEASSEYIPDMIKKIVAAAIRSGIPAQDVQVL
APMYRGPAGIDQINQLMQDLINPSEKDQLVFEAPDCQYRQGDKVIHLVNDAESNVFNGDLGYITDLLPAKYTDSKQDELT
INFAGNEIVYQRSEWYKIRLAYAMSIHKSQGSEFPVVILPITKSSHRMLQRNLIYTAITRSKSKLVLLGEFSAFHYAVKN
TGTARKTYLVERFADLLEREEPAEVVTTNSDTDDPIPEDGFILTLDNYLSIDPMIGIREEDIKDIFKK

Nucleotide


Download         Length: 2367 bp        

>NTDB_id=1005211 FGL12_RS01290 WP_138101109.1 266545..268911(-) (recD/recD2/recDB) [Streptococcus gordonii strain NCTC9124]
ATGGAATTCTATTTTTCAGGAACCGTCGAACGCATTATATTTGAAAATCCCAACAATTTCTTTCGAATTTTGTTACTGGA
TATCGAGGACACAGATGCAGAATTTGATGATTTTGAGATCATTGTGACCGGAACCATGGCCGATATCATGGAAGGACAAG
ACTATACCTTTTGGGGAACTCTTGTCCAGCATCCCAAATACGGGGAACAGCTAAAAGTAACTCGCTACGAAAGAGCAAAG
CCAACTAGTAAGGGCCTGGTCAAGTATTTTGCTAGCGATCATTTTAAAGGGATCGGTGTTAAGACCGCCCAAAAGATAAT
AGACCTCTATGGAGATAATACGATTGACCAGATCTTAGCTGATCCTAGCCGGCTCGTAAGTATTAATGGCCTTTCTGCAG
TCAATCGGGTGGCCTTCGTCAGCAAACTTAGACAAAATTACGGCACAGAGATGTTGCTCTCTAAACTCGCTGAATATGGC
ATCCCCAATAAACTTGCCTTGCAGATTCAAGATACCTACAAAGAAGAAACGCTAGAAATTGTCCAAAAATATCCTTATCA
ACTAGTTGAAGAAATTCAAGGTATTGGTTTCAAAATAGCTGACCAGTTGGCCCAGCAACTTGGTATTGAAAGCGATGCTC
CAGAGCGTTTCCGAGCTGGTCTTGTTCATACCCTTTTCAGCCAATCTATGGAGACAGGTGATACTTATATAGAAGCACGT
GACTTGCTAGCCCACACCATTGATTTGCTGGAGAATGCCCGTCAGGTTGAACTTGATCCTGCCTTGGTAGCGGATGAGTT
GGCCCACCTCATTGAAGAAGATAAGATTCAAAACGTTGATACAAAAATCTTTGAAAACAGTCTTTATTTCGCCGAAGAAG
GTATCCGTAGCAATCTGATTCGGATTCTAGAAAAAGGCAAAAAAGAAACCTTTGGTGCCCCAAAACTCGAAAGTATCATC
GAACAAGTCGAGCAAGACTTAGGGATCTGCTATGACCATATTCAAAAGAAGGCCATCTGCGATGCCATTAATCATAAGGT
GTTTATTCTGACGGGTGGGCCAGGAACTGGTAAAACAACTGTTATCAACGGCATTATTGCTACTTATGCCACTCTTCACA
AGCTAGATTTAGCTAAAAAACAGGAATTACCTATTCTGCTTGCTGCTCCGACTGGACGCGCTGCCAGGCGAATGAATGAA
TTAACTGGACTCCCCAGTGCTACTATTCACCGGCATCTAGGGATGACTGGAGATGACGATACCAGCCATTTAGATGACTA
TTTGGATGCTGATTTCATCATTGTGGATGAGTTCTCTATGGTCGATACTTGGCTGGCCAATCAACTACTCAGCAATATTT
CTTCCAACAGCAAGATTCTCATTGTGGGGGATGCTGACCAACTTCCGTCTGTCAGTCCCGGTCAGGTTCTGGCTGATCTT
TTAAAAATACGTCTTTTACCCCAAACTAAACTGACAAAAATCTACCGGCAAGGAGAAGATTCAACAATTGTTACCCTGGC
CAGTCAAATCCAACAAGGACTTCTGCCGGCTAATTTTACTGAAAAAAAGGCGGATCGATCCTATTTCGAAGCGTCTAGCG
AGTATATCCCTGACATGATTAAGAAAATCGTAGCCGCCGCCATTCGCAGTGGCATCCCTGCCCAGGACGTCCAAGTCTTG
GCCCCTATGTATCGAGGACCCGCGGGAATCGACCAAATCAACCAACTTATGCAGGATTTGATAAATCCATCAGAAAAAGA
CCAACTGGTCTTTGAAGCACCAGACTGCCAGTACCGGCAAGGAGACAAGGTCATCCACCTGGTCAATGATGCTGAAAGCA
ATGTGTTTAATGGGGACTTGGGCTATATCACGGACTTGTTGCCAGCAAAATACACCGACTCTAAACAAGATGAACTAACC
ATCAACTTCGCTGGAAATGAAATCGTCTATCAACGTAGCGAATGGTACAAGATTCGCCTGGCCTATGCCATGAGTATTCA
TAAATCACAAGGTAGTGAATTTCCTGTCGTGATTCTGCCAATCACCAAGAGTAGCCACCGGATGTTGCAACGCAACCTCA
TCTATACAGCTATTACTCGCTCAAAAAGCAAGCTCGTTCTTTTAGGAGAATTTTCTGCCTTTCACTATGCTGTAAAAAAT
ACGGGCACAGCCCGCAAAACTTATCTGGTCGAGCGTTTTGCTGATCTTTTAGAAAGAGAAGAGCCTGCTGAAGTTGTCAC
CACTAATTCTGACACAGACGATCCAATTCCTGAAGATGGTTTTATCCTTACTCTTGATAACTACCTCAGTATTGATCCCA
TGATTGGAATTAGAGAAGAGGATATTAAAGATATTTTTAAAAAATAG

Domains

Predicted by InterProScan.

AAA domain (AAA_30)

(334-522)

Helix-hairpin-helix containing domain (HHH_RecD2)

(146-236)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(661-708)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(573-643)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

40.665

99.239

0.404