Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   FGL04_RS01925 Genome accession   NZ_LR594035
Coordinates   347861..348643 (+) Length   260 a.a.
NCBI ID   WP_138068035.1    Uniprot ID   -
Organism   Streptococcus pseudoporcinus strain NCTC5385     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 342861..353643
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL04_RS01905 (NCTC5385_00402) - 343346..344308 (-) 963 WP_138068031.1 asparaginase -
  FGL04_RS01910 (NCTC5385_00403) - 344379..345767 (+) 1389 WP_138068032.1 Cof-type HAD-IIB family hydrolase -
  FGL04_RS01915 (NCTC5385_00404) - 345805..346257 (-) 453 WP_138068033.1 universal stress protein -
  FGL04_RS01920 (NCTC5385_00405) - 346454..347668 (+) 1215 WP_138068034.1 pyridoxal phosphate-dependent aminotransferase -
  FGL04_RS01925 (NCTC5385_00406) codY 347861..348643 (+) 783 WP_138068035.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  FGL04_RS01930 (NCTC5385_00407) - 348648..349196 (+) 549 WP_138068036.1 cysteine hydrolase family protein -
  FGL04_RS01935 (NCTC5385_00408) - 349242..349499 (-) 258 Protein_358 metal-sensitive transcriptional regulator -
  FGL04_RS01940 (NCTC5385_00409) - 350218..351180 (-) 963 WP_138068037.1 3-hydroxyacyl-CoA dehydrogenase -
  FGL04_RS01945 (NCTC5385_00410) - 351361..351990 (+) 630 WP_138068038.1 helix-turn-helix transcriptional regulator -
  FGL04_RS01950 (NCTC5385_00411) - 352003..352809 (+) 807 WP_007892076.1 pyruvate, water dikinase regulatory protein -

Sequence

Protein


Download         Length: 260 a.a.        Molecular weight: 28923.31 Da        Isoelectric Point: 4.5842

>NTDB_id=1005013 FGL04_RS01925 WP_138068035.1 347861..348643(+) (codY) [Streptococcus pseudoporcinus strain NCTC5385]
MPNLLEKTRKITSILQRSVDSLDAELPYNIMASRLADIIDCNACIINGGVTLLGYAMKYKTNNDRVEEFFEAQQFPESYV
KAASRVYDTEANLPIDNELTIFPIESKETYPEGLTTIAPIYGGGMRLGSLIIWRNDKKFNDDDLILIEISSTVVGIQLLN
LQTENLEETIRKQTAVNMAMNTLSYSEMKAVAAILGELDGNEGRLTASVIADRIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVINECIFEKLKEI

Nucleotide


Download         Length: 783 bp        

>NTDB_id=1005013 FGL04_RS01925 WP_138068035.1 347861..348643(+) (codY) [Streptococcus pseudoporcinus strain NCTC5385]
ATGCCCAACTTATTAGAAAAAACTCGTAAAATTACCTCAATCCTTCAACGTTCCGTAGACAGTCTTGATGCTGAATTACC
ATACAATATTATGGCTTCCCGATTAGCGGATATCATTGACTGTAATGCCTGTATCATAAATGGTGGTGTTACCCTTTTGG
GGTATGCTATGAAGTACAAAACCAACAATGACCGCGTTGAGGAGTTTTTTGAAGCTCAGCAATTCCCAGAATCCTACGTT
AAAGCGGCTAGCCGAGTTTATGATACTGAGGCTAACTTGCCAATCGATAATGAATTAACCATCTTCCCTATTGAATCCAA
GGAGACCTATCCAGAAGGTTTAACAACTATTGCCCCGATTTACGGAGGTGGTATGCGTCTAGGGTCATTAATCATTTGGC
GTAATGATAAGAAATTTAATGATGATGATTTGATTCTGATTGAAATTTCGAGTACCGTAGTAGGTATTCAATTGTTGAAT
CTCCAAACTGAGAATTTGGAGGAGACAATTCGTAAACAGACAGCCGTTAATATGGCAATGAATACTTTGTCATACTCAGA
AATGAAAGCTGTAGCGGCTATTTTAGGAGAACTAGATGGAAATGAAGGCCGTTTAACTGCTTCAGTTATTGCTGATCGTA
TCGGCATTACCCGTTCAGTAATTGTTAATGCACTGCGTAAATTGGAGAGTGCGGGTATTATTGAAAGCCGTTCTTTAGGA
ATGAAAGGTACTTATCTTAAAGTTATCAACGAATGTATCTTCGAAAAACTAAAGGAAATCTAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(3-182)

CodY helix-turn-helix domain (HTH_CodY)

(202-259)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

65.37

98.846

0.646
  codY Bacillus subtilis subsp. subtilis str. 168

53.815

95.769

0.515